PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0133s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 155aa MW: 16835.2 Da PI: 10.4826 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.5 | 3.6e-18 | 45 | 79 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++ Cagra.0133s0025.1.p 45 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 79 999*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.387 | 39 | 75 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.5E-14 | 39 | 90 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-12 | 41 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 43 | 79 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.30E-13 | 44 | 95 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 45 | 70 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.4E-16 | 45 | 79 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MLDPTDKVIE SEAMKTSVDA IEEHSSSSSN SSGGGGTISN EKKSCAICGT SKTPLWRGGP 60 AGPKSLCNAC GIRNRKKRRT LISNRSEDKK TKNKKNQSRN PKLGDSLKQR LMELGREVMM 120 QRSTAEKQRR NKLGEEEQAA VLLMALSYAS SVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0133s0025.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063926 | 1e-114 | AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. | |||
GenBank | AY084525 | 1e-114 | AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence. | |||
GenBank | AY091250 | 1e-114 | AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298741.1 | 9e-94 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 4e-87 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | R0HPE7 | 2e-92 | R0HPE7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0133s0025.1.p | 1e-108 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-87 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0133s0025.1.p |
Publications ? help Back to Top | |||
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