PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0104s0003.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 585aa MW: 67420.8 Da PI: 10.1522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 221 | 265 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+ Ed+ l + +++ G +W Ia +g++Rt+ qc r+q Cagra.0104s0003.3.p 221 GPWTEAEDKNLPRIIEEKGLTDWVEIAVSLGTHRTPFQCLARYQR 265 89*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4e-14 | 273 | 317 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+ WT+eEd++l av+++G ++W ++a+ + gR + qc +rw k Cagra.0104s0003.3.p 273 RKEWTPEEDDQLRAAVELFGDKDWQSVANVLK-GRAGTQCSNRWKK 317 789****************************9.***********98 PP | |||||||
3 | Myb_DNA-binding | 53.8 | 4.3e-17 | 324 | 369 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + Cagra.0104s0003.3.p 324 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 369 79******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 45.3 | 2.1e-14 | 376 | 420 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEde+l++a+ ++G W+++a+ + Rt++qc rw ++ Cagra.0104s0003.3.p 376 RGKWTEEEDEKLKEAIGKHGYS-WSKVASQLA-CRTDNQCLRRWKTL 420 89******************99.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.739 | 121 | 214 | IPR017877 | Myb-like domain |
SMART | SM00717 | 35 | 125 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 128 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 190 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.67E-11 | 213 | 270 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.129 | 215 | 267 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.4E-9 | 219 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-7 | 221 | 265 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.14E-6 | 222 | 267 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 227 | 279 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.31E-20 | 252 | 322 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.559 | 268 | 323 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 272 | 321 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 273 | 317 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.97E-10 | 275 | 319 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 280 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 323 | 372 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.459 | 324 | 370 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-15 | 324 | 369 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 325 | 374 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.21E-10 | 326 | 368 | No hit | No description |
SuperFamily | SSF46689 | 1.04E-25 | 350 | 425 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.579 | 371 | 425 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-13 | 375 | 423 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-20 | 375 | 421 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-13 | 376 | 420 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.75E-10 | 378 | 420 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MPAASSTFPE AAQAFVDAIR KNRAYQKFLR RKLEVIEATI EQNEKHRKNV KIVKDFQASC 60 KRRTKLALSQ RKDPRVELIS ARKCVPCDSS EGNDKKTSPL MLGPPENPFV AKYRMALEKY 120 PVSVERRNWS TEENKNLATG LKQEVQKILL YEAIEQSRDL EGSTYDIDTI NESIRNLEIT 180 PEMIRQFLPK INWDSLDIKD RSAAECEARW MSSEDPLINH GPWTEAEDKN LPRIIEEKGL 240 TDWVEIAVSL GTHRTPFQCL ARYQRSLNPS ILRKEWTPEE DDQLRAAVEL FGDKDWQSVA 300 NVLKGRAGTQ CSNRWKKSLR PTRKGRWSLE EDKRVKVAVT LFGSQNWHKI SQFVPGRTAT 360 QCRERWVNCL EPKVNRGKWT EEEDEKLKEA IGKHGYSWSK VASQLACRTD NQCLRRWKTL 420 YPHQVVLLQQ ARRLRKEAIV GNFVDRESER PALVTGAILA LPEISLEPDP HSVALKNKRK 480 AKQRKSDAER QPKRRRKGLE KCSGDVCRQE NATVCEKEPN NGGEEKSLEL ERYNEIQDNA 540 KEKQRRSRKR VAETPNNTTG LRKLTPRRKK VSAVVPIKNQ DALN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-30 | 182 | 419 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-30 | 182 | 419 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 477 | 495 | KRKAKQRKSDAERQPKRRR |
2 | 547 | 569 | RKRVAETPNNTTGLRKLTPRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0104s0003.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY033827 | 0.0 | AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296998.1 | 0.0 | snRNA-activating protein complex subunit 4 | ||||
TrEMBL | R0G3G9 | 0.0 | R0G3G9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0104s0003.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0104s0003.3.p |