PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0094s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 273aa    MW: 31554.3 Da    PI: 6.9554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0094s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l++ +  +G  +W+t++   g+ R +k+c++rw +yl
  Cagra.0094s0035.1.p 14 KGLWSPEEDQKLKNFIISHGHACWTTVPLLAGLQRNGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding54.72.4e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +++eE+++++ ++  lG++ W++Ia++++ gRt++++k++w++yl
  Cagra.0094s0035.1.p  67 RGTFSEEEEDIILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 112
                          899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-20964IPR009057Homeodomain-like
PROSITE profilePS5129414.954961IPR017930Myb domain
SuperFamilySSF466895.5E-2811108IPR009057Homeodomain-like
SMARTSM007179.8E-101363IPR001005SANT/Myb domain
PfamPF002496.4E-121461IPR001005SANT/Myb domain
CDDcd001678.72E-81761No hitNo description
PROSITE profilePS5129425.98962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565115IPR009057Homeodomain-like
SMARTSM007178.6E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1667112IPR001005SANT/Myb domain
CDDcd001673.70E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTKSGERPKQ RQRKGLWSPE EDQKLKNFII SHGHACWTTV PLLAGLQRNG KSCRLRWINY  60
LRPGLKRGTF SEEEEDIILT LHSSLGNKWS RIAKYLPGRT DNEIKNYWHS YLKKRWLKSQ  120
PQLKTQISDI TESTSSLLSC GKRNLEAETL NHVISFEKLA ELPSSSSSPL PQQENNTNMM  180
MNNDKYLPKL FFSEWISSSN PHIDYSTGVT DSKHVSQTQD QIDEEEVMMI NNSYSSLEDV  240
MLRTDQFLQP DHDYANYYSS GDFFINNDQS YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141157107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0094s0035.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196360.0AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279733.10.0transcription factor LAF1
SwissprotQ9M0K44e-93LAF1_ARATH; Transcription factor LAF1
TrEMBLR0EUZ20.0R0EUZ2_9BRAS; Uncharacterized protein
STRINGCagra.0094s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-160myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]