PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0094s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 387aa    MW: 44402.5 Da    PI: 7.1727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0094s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018118141123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ Cg+ ++++ +Lk+H +  H
  Cagra.0094s0013.1.p 118 YICGVCGRKCKTNLELKKHFKQlH 141
                          89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.5E-538108IPR029060PIN domain-like
PROSITE profilePS5015710.554118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
CDDcd061676.13E-11130272No hitNo description
Gene3DG3DSA:3.40.50.10105.5E-5203267IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQISFPLRRL RPITSCLKSA SSSEIDLVRN KEGIFAPKEK KVVVLWDLDN KPPRGPPFEA  60
ATALRKVAEK LGRVVEISAY ANRHAFIHLP HWVVEERRER RNLDFMERKG EVTPIEPYIC  120
GVCGRKCKTN LELKKHFKQL HERERQKKVN RMRSLKGKKR QKFKERYVSG NEKYNEAARR  180
LLTPKVGYGL EAELRRAGVY VKTVEDKPQA ADWAVKRQIQ HSMTRGIDWL VLVSDDKDFS  240
DMLRKAREAD LGTLVVSDRD RALGRHADLW VPWIGVEKGE IGEKDLIPGK RPRFEEEESE  300
VGFGGDELFS LSYDEDERAE MTVESDGFGR FNVSAFSEDE WVEDEGDFAL SEIRAIIECL  360
NGLENILKVG EAEKNTEDAN YLLPTD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0094s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854060.0AY085406.1 Arabidopsis thaliana clone 150246 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640872.10.0uncharacterized protein LOC111831215
TrEMBLR0GTZ40.0R0GTZ4_9BRAS; Uncharacterized protein
STRINGCagra.0094s0013.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein