PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0094s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 304aa MW: 32784.9 Da PI: 7.5064 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.8e-37 | 59 | 138 | 2 | 80 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++ +++ + Cagra.0094s0002.1.p 59 PATKRPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsVNGTLKI 138 5789************************************************************9999955532222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.698 | 65 | 119 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.5E-30 | 65 | 144 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MESNQEGKAI REIDGNVDQV TMTNLFDPDP KPNPGFLMKK EEVGFLQPQM MTTTSSLKPA 60 TKRPTKDRHT KVEGRGRRIR MPAGCAARIF QLTRELGHKS DGETIRWLLE RAEPAIIEAT 120 GTGTIPAIAV SVNGTLKIPT TSPNDRGADG DGDGDLMKKR RKRNCTSDFV DVNEHESCHS 180 SVTSGLAPIT PSNYGVNIMN VNTQGLVPFW PMGMGTAFVT NGPNQMGQMW AIPTVATAPF 240 LNVGTRPVSS YVSNAEPQME TSGDGGATQP LRDFSLEVYD KKELQFLGGS GNSSPSSSCH 300 NKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 161 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00007 | PBM | Transfer from 495258 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0094s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025623 | 0.0 | AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18. | |||
GenBank | AC237330 | 0.0 | AC237330.1 Arabidopsis lyrata clone JGIFAFI-57C3, complete sequence. | |||
GenBank | AK118579 | 0.0 | AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01. | |||
GenBank | BT008779 | 0.0 | BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280812.2 | 0.0 | transcription factor TCP19 | ||||
Refseq | XP_006280813.1 | 0.0 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 1e-154 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | R0EXS1 | 0.0 | R0EXS1_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0GMZ1 | 0.0 | R0GMZ1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0094s0002.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12583 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-150 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0094s0002.1.p |