PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0084s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 41277.4 Da PI: 4.3049 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.6e-20 | 123 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g Cagra.0084s0074.1.p 123 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 173 59********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.39E-34 | 123 | 180 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-30 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-12 | 124 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 124 | 182 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDEYINFRPL KYTEHKTSVT KYTKKSSSPA KKLSDQSPPD SFRKVRISFT DPDATDSSSD 60 EDEEDFLFPR RRVKRFVNEI TVEPACNNAS AAVSMKERKR LSDESLQSPA KRPLKVSVSG 120 QTKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF 180 SIPPQEEEEE EEPEPVIDTK PDFNITTTTT TTTTSSSEST EDFQHLSSPT SVLNLRSEEI 240 QQIQQPFKSS KPEPEISEAP WWHTGFSTGT GETTDDSFPL NTLFLDSYFN ESPPEMSIFD 300 QPMGHHQGFY ENDDIFSDMI LESESIINTI GDDDDELMTS SSIKDIGSMF SDFDDSLISD 360 LLVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 123 | 182 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-22 | 123 | 182 | 4 | 64 | ATERF1 |
3gcc_A | 7e-22 | 123 | 182 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0084s0074.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280717.1 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
Swissprot | Q9FK12 | 1e-160 | CRF3_ARATH; Ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | R0GMR3 | 0.0 | R0GMR3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0084s0074.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-139 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0084s0074.1.p |
Publications ? help Back to Top | |||
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