PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0083s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 360aa MW: 40084.8 Da PI: 6.8004 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.7 | 1.8e-29 | 62 | 167 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + Cagra.0083s0006.1.p 62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgfgespsst 151 78*************************************************************666666555555555555554444443 PP TCP 66 ...............s 66 + Cagra.0083s0006.1.p 152 tfpgtnlgflenwdlG 167 3333333333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-27 | 63 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.789 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MRSRECEEEE IQAKQEGDNS QNNQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT 60 FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEAAKDDVDK 120 LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTFPGTNLGF LENWDLGGSS RTRSRITDTA 180 TTQRESFDLD KGKWIKHDEN SNQDHQGFDT THQHFPLSNP YNNTSSYYNL GHLQQSLDQS 240 GNNVTVAISN VAANNNNNLN LPPPSSSAGD GSQLFFGPTP PAMSSLFPTY PSFLGASHQH 300 HHHQVVDGAG HLQLFSSNSN TATQQQMMTG NTSLIRPFHH LMSSNHDTDR HSSDNDSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0083s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008269 | 0.0 | AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3. | |||
GenBank | BT029489 | 0.0 | BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280693.1 | 0.0 | transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 0.0 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 0.0 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0083s0006.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 0.0 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0083s0006.1.p |
Publications ? help Back to Top | |||
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