PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0062s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 335aa    MW: 36701.4 Da    PI: 8.9196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0062s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19133183256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Cagra.0062s0002.1.p 133 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 183
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.68E-17132192No hitNo description
PROSITE profilePS5103223.301133190IPR001471AP2/ERF domain
SMARTSM003801.1E-36133196IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22133190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-31133191IPR001471AP2/ERF domain
PRINTSPR003674.3E-10134145IPR001471AP2/ERF domain
PfamPF008473.4E-13134183IPR001471AP2/ERF domain
PRINTSPR003674.3E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYYNFHSHTN FSPRISEIRA SLSQIILAGG PNTLDSIFSL LTPSSVESAT TSFNTLNPPP  60
PPQLGSSVYL RQRDIIEKFH LQNRAISSTP PLFSSSFDHR QTSELMLQAA AETPAGAFAA  120
ALAAGRTTKK KKLYRGVRQR HWGKWVAEIR LPQNRMRVWL GTYDTAEAAA YAYDRAAYKL  180
RGEYARLNFP NLKDPSELLG LGDSSKLLAL KNAVDGKIQS ICQRVRKERA KKSGKVSKNS  240
SDSSYSSSPE IISSSPATMT TTAVNSEESY WVSQMALCNS ENSSPASVSV SDEIPATAAM  300
TEEEDAMMGV DTDGFLLARM PSFDPELIWQ VLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19130190263ATERF1
3gcc_A1e-19130190263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0062s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302524.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-167ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLR0GHT00.0R0GHT0_9BRAS; Uncharacterized protein
STRINGCagra.0062s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-141ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]