PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0050s0108.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 689aa    MW: 76822.6 Da    PI: 6.4038
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0050s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.41.2e-49632141144
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagss 85 
                          ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a aagss
  Cagra.0050s0108.1.p  63 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSAVAAGSS 152
                          689******************************************************************988899999998888888988 PP

               DUF822  86 as..aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144
                          as  as+++s   ++++ss  +spve +s+++k + +p ps +d  +++s++ +++v +  +
  Cagra.0050s0108.1.p 153 AShiASQQTSPPaLRVVSSGHRSPVELSSCRMKGVFTPGPSPYDIPPTQSPELVVSVNKAVG 214
                          8877788888777***********************************99877776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.4E-4164191IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.08E-172240684IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-186243685IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.2E-95249669IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64280294IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64301319IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64323344IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060327335IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007503.2E-64416438IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64489508IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64523539IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64540551IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64558581IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-64598620IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MATDMQKLLV TSEEDDDEDM DMDVKEEDDE QRNRGTRAAS GSSNDDFMFQ QSMQDQVGTP  60
GGGGSRRSRP LEEKERTKLR ERHRRAITAR ILGGLRRHGN YNLRVRADIN DVIAALAREA  120
GWVVLPDGTT FPSKSQGTKP PGGSSAVAAG SSASHIASQQ TSPPALRVVS SGHRSPVELS  180
SCRMKGVFTP GPSPYDIPPT QSPELVVSVN KAVGLVGCSI DVINSKQILE IPPNLTEQDF  240
SGTPYVPVYV MLPLGVINMK CELADRDGLL KHLRILKSIH VDGVKVDCWW GIVEGHSPQE  300
YNWNGYKQLF QMIRDLNLKI QVLMSFHECG GNVGDDVCIP LPHWVAEIGR TNPDIYFTDR  360
EGRRNPECLS WGIDKERVLR GRTALEVYFD YMRSFRIELA EFVEDGVISM VEIGLGPCGE  420
LRYPSCPIKH GWRYPGIGEF QCYDKYLLKS LRKAAESRGH LLWARGPDNT GSYNSQPQGT  480
GFFCDGGDYD GLYGRFFLKW YSQVLIDHAD QILSLAKLVF NSSCIAAKLP DVHWWYRTTS  540
HAAELTAGFY NPSNQDGYAA IASTLNKHGA TLSFVSGEVQ VLNRPDDFTG ALGEPEAVAW  600
QVLNAAWDSD TPIARENSLP CHDRVGYNKM LESLKFPNDP DRRHLSSFAY SRLIPTLMEG  660
HNIVEFERFV KKLHGEAVMN HHHQHQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13824567611444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0050s0108.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293786.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLR0HB940.0R0HB94_9BRAS; Beta-amylase
STRINGCagra.0050s0108.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]