PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0050s0039.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 354aa    MW: 38543.5 Da    PI: 9.143
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0050s0039.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.4e-3966125463
               zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  Cagra.0050s0039.2.p  66 EKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 125
                          7899****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2563115IPR003851Zinc finger, Dof-type
PfamPF027014.2E-3367122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90168122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009416Biological Processresponse to light stimulus
GO:0009845Biological Processseed germination
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMNVKPMEQI MIPNSSTHQS NTTSNARPNT ILSSNGVSAA GAPVSGVSNN NNNTAVVAER  60
KARPLEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR YWTEGGSLRN VPVGGSSRKN  120
KRSSSSSSSN ILQTMPSSLG LTTTLPDLNP PILFSNQIPN KSKGSSQDLN LLSFPVMQDH  180
HHHVHMSQFL QMPKMEGNGN ITHQQPSSSS SLYGSSSSPV SALELLRTGV NVSSRSGINS  240
FMPPGPMMDS NTVLYTSSGF PTMVDYKPSN LSFSTDHQGL GHNSNNNNRS EAHNDHHQEG  300
RVLFPFGDQM KELSSSITQE VDHDDNQQQK SHGNNNNGYW SGMFSTTGGG SSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00319DAPTransfer from AT2G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0050s0039.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294447.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_023639741.10.0dof zinc finger protein DOF2.5 isoform X2
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY20.0R0HPY2_9BRAS; Uncharacterized protein
STRINGCagra.0050s0039.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.11e-180Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]