PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0050s0039.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 366aa MW: 39967.1 Da PI: 8.9223 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123 | 9.9e-39 | 78 | 137 | 4 | 63 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss Cagra.0050s0039.1.p 78 EKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 137 7899****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 75 | 127 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-33 | 79 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 80 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 82 | 118 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDATKWTQGF QEMMNVKPME QIMIPNSSTH QSNTTSNARP NTILSSNGVS AAGAPVSGVS 60 NNNNNTAVVA ERKARPLEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL 120 RNVPVGGSSR KNKRSSSSSS SNILQTMPSS LGLTTTLPDL NPPILFSNQI PNKSKGSSQD 180 LNLLSFPVMQ DHHHHVHMSQ FLQMPKMEGN GNITHQQPSS SSSLYGSSSS PVSALELLRT 240 GVNVSSRSGI NSFMPPGPMM DSNTVLYTSS GFPTMVDYKP SNLSFSTDHQ GLGHNSNNNN 300 RSEAHNDHHQ EGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNG YWSGMFSTTG 360 GGSSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00319 | DAP | Transfer from AT2G46590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0050s0039.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352859 | 0.0 | AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294447.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X1 | ||||
Swissprot | Q9ZPY0 | 0.0 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | R0HPY2 | 0.0 | R0HPY2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0050s0039.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.2 | 0.0 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0050s0039.1.p |
Publications ? help Back to Top | |||
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