PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0026s0060.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 371aa    MW: 40514.8 Da    PI: 5.3125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0026s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10203250455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Cagra.0026s0060.1.p 203 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 250
                          8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-17197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-11197254No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17199268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNMDKETEQT LNYLPLGQSD PFGNGNDGSI GDFLGRYCNP QEISPLTLQS FSLNSQISEN  60
FPIAGGIRFP PYPGQFGSDR EFGVLGSQPT TQESNKSSLL DPDSVSDRVH ATKSNSRKRK  120
SIPTGNGKES PASSSLTASN SKVSGENGGS KAGKRSKQDE AGSSKNGLEK CDSKGDNKDD  180
AKPPEAPKDY IHVRARRGQA TDSHSLAERA RREKISERMT LLQDLVPGCN RITGKAVMLD  240
EIINYVQSLQ RQVEFLSMKL ATVNPRMEFN ANSTLSTEMI QPGESLTQSL YAIACSEQRL  300
PSAYYSLGKN MPRFSDTQFP SNDGFVQAET PGFWENNDLQ SIVQMGFGDI QQQSSNNNCS  360
EPTLQMKLEP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0026s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297936.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLR0HM890.0R0HM89_9BRAS; Uncharacterized protein
STRINGCagra.0026s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]