PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0026s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 299aa MW: 32536.8 Da PI: 7.1004 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.9e-34 | 41 | 95 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Cagra.0026s0024.1.p 41 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.938 | 38 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 38 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-17 | 40 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.0E-24 | 41 | 96 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-8 | 43 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-24 | 139 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MYSAIRSLPL DGGHVGPDYH GPLDGTNLPG DACLVLTTDP KPRLRWTAEL HERFVDAVTQ 60 LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAC KESTENSKDA SCVGESQDTG 120 SSSTSSLRMA QQEQNEGYQV TEALRAQMEV QRRLHEQLEY GQVQRRLQLR IEAQGKYLQS 180 ILEKACKAFD EQAAAFAGLE AAREELSELA IKVSNVSQGT TVPFFDATKM MMMPSLSELA 240 VAIDNKNNIT TNCSVESSLT SVTNGSSISA ASMKKRQRGD NMGVGYDAGW IMPSSTIG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0026s0024.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY050355 | 0.0 | AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds. | |||
GenBank | AY088428 | 0.0 | AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence. | |||
GenBank | AY094046 | 0.0 | AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641504.1 | 0.0 | protein PHR1-LIKE 2 isoform X1 | ||||
Swissprot | Q94A57 | 0.0 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | R0G876 | 0.0 | R0G876_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0026s0024.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3515 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.2 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0026s0024.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|