PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0001s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 512aa MW: 56745.4 Da PI: 3.9451 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.2e-30 | 338 | 395 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsY++Ct ++C+vkk+ver a++ k++++ Y g Hnh+ Cagra.0001s0017.1.p 338 EDGFRWRKYGQKVVKGNPNPRSYFKCTNNDCNVKKHVERGADNCKILVTSYDGIHNHP 395 7********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-30 | 323 | 397 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-25 | 332 | 397 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.458 | 332 | 397 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-34 | 337 | 396 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-22 | 338 | 395 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 512 aa Download sequence Send to blast |
MSDFDGNFNE STSCWAPPFS PSPRAILAMI DQAEDDGLDL ISEMFPHTNL PRDHSAQSSE 60 QRSGLGQRLA ARVGFSPPPL DTENISPSAA SLRSSTTVPP PVSAIPPGFI PSTLLQSPNM 120 VTDSSQMITA PSSDTNYGPQ GMVETSGEGN APTLIFNNDH PYQPVNADLP LLDVFDDVPT 180 EESVYLPTYE TDHVEPIGDS LVPNSFEHEF VGDANVNFIS NEGTESVKDS ESEDDLDFDF 240 EFEDEDEDEA EAEDNDEDKA EDEDEDNDED GDEDEDDEED ENDEEEADHD DEADFDDAEP 300 SSPKRRKFEA SSNMIGATRT NKAQRVILQM ESDEDNPEDG FRWRKYGQKV VKGNPNPRSY 360 FKCTNNDCNV KKHVERGADN CKILVTSYDG IHNHPPPPAR CRINSGPRNR SGTTTTTQNQ 420 SYRTDRLGRF PAPSSVITPM EMMPLSSFTP PLDMSRVYMT GLNKLPNFSV FQNPGYMYRN 480 DEPMMNVVPN GSGIYGGIRH RLFAEFGVNL M* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-22 | 328 | 397 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-22 | 328 | 397 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0001s0017.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ303349 | 0.0 | AJ303349.1 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645943.1 | 0.0 | probable WRKY transcription factor 10 | ||||
Swissprot | Q9LG05 | 1e-165 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | D7KMZ8 | 0.0 | D7KMZ8_ARALL; WRKY10 | ||||
STRING | Cagra.0001s0017.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55600.1 | 2e-79 | WRKY DNA-binding protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0001s0017.1.p |