PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g16400 | ||||||||
Common Name | GSCOC_T00038178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 503aa MW: 56681.5 Da PI: 6.1134 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.9 | 4.1e-107 | 131 | 500 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk..alppsetseknsseelaalklfsevsPilkfshl 96 lv+lL++cAeav+ +d++ a++l++ l+ a g+++qR+a++f+++L+ rl v+ + + + + +++ s e+ +al+l +e++P ++f+h Cc11_g16400 131 LVQLLVACAEAVAYRDKRHASTLITDLQADALVFGTSFQRVASCFVQGLSDRLEL-VQPCGAvgDIGAIPKTIAFSLEKEKALSLVYEICPQIQFGHY 227 689*************************************************998.3333330034444444445999999***************** PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +aN Il+a+ege+ +H++D++++ +G QW +L+ +a R++ +lRiTgvg+ +++l +g+ L ++A++lgv+fef v v+++le+l+ Cc11_g16400 228 VANASILQAFEGESSIHVVDLGMTlglrHGYQWRSLIFNFAIRAGRRCRLRITGVGN----CADRLLVIGDELGEYAQNLGVKFEFAV-VESNLENLR 320 ********************97652222889**************************....**************************9.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 e+L++ ++E+l++n++l+lh ++es + +vL+++++l P+ +++veqe++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++ Cc11_g16400 321 REDLKILHDEVLVINSILELHCAVKESRGALN---SVLQMLNDLTPRAFILVEQESSHNGPFFLGRFMEALYYYSAIFDSLDAMLPKYDTRRSKMEQF 415 ***********************988877766...8************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++g+ei+n+v+ceg +r+erhe+l +Wr+r+++aGF+p+p++ + +qa+ l+ v+ +gy++ ee+g+lvlgWk++p+v++S+W+ Cc11_g16400 416 YFGEEIKNIVSCEGPARVERHERLDQWRRRMGRAGFEPAPVK--MLTQARQWLESVQaCEGYTISEEKGCLVLGWKSKPIVAASCWK 500 ****************************************96..799***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.735 | 105 | 481 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-104 | 131 | 500 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MEPKFFCYDK SNASNSLDLN ASSASCYILS FQDSSGLDET RNSKRLKQLD NFNQYFGNEY 60 HHDCSRDVVY KGSINGSTEE KKCSTRPLFR DHIWAYAQKY MAAAAVEEAD GAYDKEEHVI 120 KEEGKEDGMR LVQLLVACAE AVAYRDKRHA STLITDLQAD ALVFGTSFQR VASCFVQGLS 180 DRLELVQPCG AVGDIGAIPK TIAFSLEKEK ALSLVYEICP QIQFGHYVAN ASILQAFEGE 240 SSIHVVDLGM TLGLRHGYQW RSLIFNFAIR AGRRCRLRIT GVGNCADRLL VIGDELGEYA 300 QNLGVKFEFA VVESNLENLR REDLKILHDE VLVINSILEL HCAVKESRGA LNSVLQMLND 360 LTPRAFILVE QESSHNGPFF LGRFMEALYY YSAIFDSLDA MLPKYDTRRS KMEQFYFGEE 420 IKNIVSCEGP ARVERHERLD QWRRRMGRAG FEPAPVKMLT QARQWLESVQ ACEGYTISEE 480 KGCLVLGWKS KPIVAASCWK CS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-58 | 115 | 499 | 3 | 378 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027152602.1 | 0.0 | DELLA protein GAI-like | ||||
TrEMBL | A0A068UYH7 | 0.0 | A0A068UYH7_COFCA; Uncharacterized protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | EMJ11217 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 3e-81 | GRAS family protein |