PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g16400
Common NameGSCOC_T00038178001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 503aa    MW: 56681.5 Da    PI: 6.1134
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g16400genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.94.1e-1071315001374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk..alppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lL++cAeav+ +d++ a++l++ l+  a   g+++qR+a++f+++L+ rl   v+ + +   + + +++   s e+ +al+l +e++P ++f+h 
  Cc11_g16400 131 LVQLLVACAEAVAYRDKRHASTLITDLQADALVFGTSFQRVASCFVQGLSDRLEL-VQPCGAvgDIGAIPKTIAFSLEKEKALSLVYEICPQIQFGHY 227
                  689*************************************************998.3333330034444444445999999***************** PP

         GRAS  97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  +aN  Il+a+ege+ +H++D++++    +G QW +L+  +a R++   +lRiTgvg+     +++l  +g+ L ++A++lgv+fef v v+++le+l+
  Cc11_g16400 228 VANASILQAFEGESSIHVVDLGMTlglrHGYQWRSLIFNFAIRAGRRCRLRITGVGN----CADRLLVIGDELGEYAQNLGVKFEFAV-VESNLENLR 320
                  ********************97652222889**************************....**************************9.7******** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e+L++ ++E+l++n++l+lh  ++es    +   +vL+++++l P+ +++veqe++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++
  Cc11_g16400 321 REDLKILHDEVLVINSILELHCAVKESRGALN---SVLQMLNDLTPRAFILVEQESSHNGPFFLGRFMEALYYYSAIFDSLDAMLPKYDTRRSKMEQF 415
                  ***********************988877766...8************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++g+ei+n+v+ceg +r+erhe+l +Wr+r+++aGF+p+p++  + +qa+  l+ v+  +gy++ ee+g+lvlgWk++p+v++S+W+
  Cc11_g16400 416 YFGEEIKNIVSCEGPARVERHERLDQWRRRMGRAGFEPAPVK--MLTQARQWLESVQaCEGYTISEEKGCLVLGWKSKPIVAASCWK 500
                  ****************************************96..799***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.735105481IPR005202Transcription factor GRAS
PfamPF035141.4E-104131500IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEPKFFCYDK SNASNSLDLN ASSASCYILS FQDSSGLDET RNSKRLKQLD NFNQYFGNEY  60
HHDCSRDVVY KGSINGSTEE KKCSTRPLFR DHIWAYAQKY MAAAAVEEAD GAYDKEEHVI  120
KEEGKEDGMR LVQLLVACAE AVAYRDKRHA STLITDLQAD ALVFGTSFQR VASCFVQGLS  180
DRLELVQPCG AVGDIGAIPK TIAFSLEKEK ALSLVYEICP QIQFGHYVAN ASILQAFEGE  240
SSIHVVDLGM TLGLRHGYQW RSLIFNFAIR AGRRCRLRIT GVGNCADRLL VIGDELGEYA  300
QNLGVKFEFA VVESNLENLR REDLKILHDE VLVINSILEL HCAVKESRGA LNSVLQMLND  360
LTPRAFILVE QESSHNGPFF LGRFMEALYY YSAIFDSLDA MLPKYDTRRS KMEQFYFGEE  420
IKNIVSCEGP ARVERHERLD QWRRRMGRAG FEPAPVKMLT QARQWLESVQ ACEGYTISEE  480
KGCLVLGWKS KPIVAASCWK CS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-581154993378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027152602.10.0DELLA protein GAI-like
TrEMBLA0A068UYH70.0A0A068UYH7_COFCA; Uncharacterized protein
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
STRINGEMJ112170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-81GRAS family protein