PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g16330
Common NameGSCOC_T00038170001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 524aa    MW: 58926.6 Da    PI: 6.5129
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g16330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.51.7e-24164217155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Cc11_g16330 164 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 217
                  68*******************.9*******************************8 PP
2Response_reg61.44.7e-2129318109
                   HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  18 lekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
   Cc11_g16330   2 LKKCSY-EVTTCGLAREALNLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 93 
                   667788.9**************999999**********************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001564.19E-23199No hitNo description
PIRSFPIRSF0363921.8E-1291515IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-261106IPR011006CheY-like superfamily
SMARTSM004481.1E-11195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.2E-341129No hitNo description
PROSITE profilePS5011035.609199IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-17294IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466892.87E-17162220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27163221IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-22164217IPR006447Myb domain, plants
PfamPF002493.3E-8166216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MLKKCSYEVT TCGLAREALN LLRERKDGFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM  60
MSVDGETSRV MKGVQHGACD YLLKPIRMKE LRNIWQHVFR KRIHEVRDIE FHEGIDEIHL  120
MKNGSDLSED RRLPSGIDSF SGKKRKEAEK HDDRECNDPS SVKKARVVWT VDLHQKFVKA  180
VNQIGFDKVG PKKILDLMGV PWLTRENVAS HLQKYRLYLG RLQKEKELTT SFGGMKDSDI  240
SAKEPNGNHC LHDLVNKQQC DLASGSYNIQ GNKNMIQNVD LKMHEADLKC TVPKPMEEPK  300
KAIDGESSDP QKSSSKKMSL NHSFGQFDSD LEFAAVIPKQ YPWNEETSQA QFSRERRPHF  360
QPKRGFNTLP LTYLPENIQL DCVQPSSSPN SRPSSIDRDK LAEAEMKPAY VKNRSQGMEQ  420
LSPAGCDGDL FSAQPGSKLT NNQAFKPTQS AVCSMNNHSL DENLEGGMES AGRSLNFASG  480
TDYTSWDENL HSGSLQGDFQ PVSTGPQGIE FLNYIIDQGL FIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16160222163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100212.10.0two-component response regulator ORR26 isoform X1
RefseqXP_027152868.10.0two-component response regulator ORR26
SwissprotQ5N6V81e-122ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A068UYB20.0A0A068UYB2_COFCA; Two-component response regulator
STRINGVIT_01s0010g02230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-99response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]