PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g15790
Common NameGSCOC_T00038097001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 395aa    MW: 43018 Da    PI: 6.6161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g15790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-175099255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Cc11_g15790 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                 59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3450113IPR001471AP2/ERF domain
PfamPF008471.0E-105099IPR001471AP2/ERF domain
PROSITE profilePS5103222.08950107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2950106IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2150107IPR016177DNA-binding domain
CDDcd000185.70E-3050106No hitNo description
PRINTSPR003672.3E-95162IPR001471AP2/ERF domain
PRINTSPR003672.3E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEEAMRRLGC LTQAPESDPL LNTSAISKRC TTSTAKRSQK DGASNSGTMR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPT SPSHDTLIPP  120
FHYSKSSSQP AFQSSRSSPH LADHFSGSAN QRNTTSNSVN MLFFRDLFNS SSTNSSILTS  180
SSTLPLYEQG PFANLNFSNS LMGNQSCNNN LTAPKTIDSL STTISLQQKF DEYQQTVCSG  240
VPTSSTSNNQ VECMDFFPSE PSDSGLLQEI IQGFLPKEKK IVKSEPELAL VDSFAASSSS  300
AVTTDVSMNL SLEGGGLKKR IGDAAYLDCH VPLPQLLDNF SAVVPPQPIP FYSEIYHPAE  360
NVQGSQECML GLGEGFHQYP DLLGAFAAAK MQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20501061471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096362.10.0ethylene-responsive transcription factor ESR2-like
TrEMBLA0A068V0530.0A0A068V053_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-18ERF family protein