PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g15350 | ||||||||
Common Name | GSCOC_T00038045001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 172aa MW: 18948.4 Da PI: 6.7691 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 180.3 | 1.1e-55 | 6 | 163 | 2 | 163 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 ++ + +q+CyvqC++C+til+v+vP++sl+ vvtvrCGhCtsllsvn++ as +l a ++ + +++v +++++n ++ + Cc11_g15350 6 HLLDLQGQICYVQCGYCTTILLVNVPYSSLSAVVTVRCGHCTSLLSVNMTRASflplHLFAP-------SDQSDQSTTQVCPQETDVNADDHKGLDMQ 96 5677899*****************************************99888444333333.......33445566777777777777777777777 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++s+ +s+ ++ee ++ +++PPekrqr+Psaynrfi eeiqr+ka nP ++h++afs aak ++f Cc11_g15350 97 IPSHVVSSPDEEEGE-TQAINKPPEKRQRAPSAYNRFIGEEIQRLKAINPTMTHKQAFSRAAKSVSYF 163 888666655555544.6789*******************************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-52 | 11 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.69E-5 | 112 | 157 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSTLNHLLDL QGQICYVQCG YCTTILLVNV PYSSLSAVVT VRCGHCTSLL SVNMTRASFL 60 PLHLFAPSDQ SDQSTTQVCP QETDVNADDH KGLDMQIPSH VVSSPDEEEG ETQAINKPPE 120 KRQRAPSAYN RFIGEEIQRL KAINPTMTHK QAFSRAAKSV SYFYNFVPGK V* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099769.1 | 1e-116 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 8e-57 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A068UY94 | 1e-125 | A0A068UY94_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0127g00330.t01 | 3e-66 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-59 | YABBY family protein |
Publications ? help Back to Top | |||
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