PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g15060
Common NameGSCOC_T00001022001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 322aa    MW: 35276.5 Da    PI: 5.0282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g15060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12.1e-2752146186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l+Li+++r  e+r+rrg+           +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e+ s + + ++l+
  Cc11_g15060  52 RWTRQEILVLIQGKRVAENRVRRGRtaglafgsaHVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREETDSFWLMRNDLR 146
                  8**********************8666777777689********************************************999988998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.14E-1351125No hitNo description
PROSITE profilePS500906.452118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-552117IPR009057Homeodomain-like
PfamPF138378.3E-1252141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEQLSLAV AAAPPHSDSP SPSPALNGRQ PSTTALDPHK DDDSAKVPRL PRWTRQEILV  60
LIQGKRVAEN RVRRGRTAGL AFGSAHVEPK WASVSSYCKR HGVNRGPVQC RKRWSNLAGD  120
FKKIKEWESQ IREETDSFWL MRNDLRRERK LPGFFDREVY DILDGGGRAD GATPAAEEGA  180
EELVLALAPS AAEGPEEADA ETEAVFDSGR SAAADDGLFS DFEQSVQEEV VGTPDKEFRP  240
ANDTPVTAVP APTPISEKQY QPISQGHPAQ GMFRYLPTVT NLSNVFFSCS LEMPCSSSKT  300
NFCLVFQDVY PIAVKMGEFL L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100204.10.0trihelix transcription factor ASR3 isoform X2
RefseqXP_027154551.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-82ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A068VDQ70.0A0A068VDQ7_COFCA; Uncharacterized protein
STRINGXP_010249232.11e-109(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-80Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]