PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g14890
Common NameGSCOC_T00001046001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 332aa    MW: 35739.5 Da    PI: 5.8102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g14890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-194999155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Cc11_g14890 49 SRFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 99
                 6788******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-2149108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-2950107IPR001471AP2/ERF domain
PROSITE profilePS5103220.74550107IPR001471AP2/ERF domain
SMARTSM003804.2E-3450113IPR001471AP2/ERF domain
CDDcd000181.50E-3050106No hitNo description
PRINTSPR003674.7E-85162IPR001471AP2/ERF domain
PfamPF008475.3E-125199IPR001471AP2/ERF domain
PRINTSPR003674.7E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDASSSRGSK KSNDEVVLSG NSAASPNSKS RRKNQQQQQQ DQSSGGGSSR FLGVRRRPWG  60
RYAAEIRDPT TKERHWLGTF DTAEEAALAY DRAARSMRGS RARTNFVYSD MPPGSSVTSI  120
VSPDESDSLI HHHQHHQQQF LFFGGHHETS NSTNVIINSL FQQEEDQNTN SAAAPGDSYD  180
NMMSSFLLYG NNSDDRSSSS SGAGAELPPL PPDITSSYFG SATSEPPPLL LSDTGRGILN  240
DMSFLELSER PSRPSFSCTQ GIMEYHDLVS SGTTGTATAA AAATAGSCDF VHPSSSDSFG  300
ADHANILDDH HHHLSCSSTN NSINFSSFGW F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2051106359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027152587.10.0ethylene-responsive transcription factor ERF115-like
SwissprotQ9M6442e-47LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A068VEH50.0A0A068VEH5_COFCA; Uncharacterized protein
STRINGEOX995731e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-29ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]