PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g13390
Common NameGSCOC_T00032186001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 271aa    MW: 30256 Da    PI: 9.5651
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g13390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly213.12.7e-66932301138
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  svyk+kaal+ +++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+ e+++l++l++k+sceffhdp++++s+eG+vrk+lkveP
  Cc11_g13390  93 SVYKGKAALTAEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAASVRQYDWSRKQVFSLSVNEIGSLISLGAKDSCEFFHDPFKGKSDEGRVRKVLKVEP 190
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                  lpdGsG+f+nlsv+n+l++++e++++Pv+kaefavl s +
  Cc11_g13390 191 LPDGSGHFFNLSVQNKLINVDENIYIPVTKAEFAVLTSGF 230
                  ************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-7880253IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.57E-7886270IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-6194228IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLHLNFSSSL SPIQNPSKQH PPPQSYHAFF SNNTSPFNLK TKTSSLSFSN STKNLTLKCR  60
HSGYFEPQEP QQQRFSPPDQ QGTLPSRVYV GYSVYKGKAA LTAEPRPPEF TPLDSGAFKL  120
SKEGFVLLQF APAASVRQYD WSRKQVFSLS VNEIGSLISL GAKDSCEFFH DPFKGKSDEG  180
RVRKVLKVEP LPDGSGHFFN LSVQNKLINV DENIYIPVTK AEFAVLTSGF NFILPYLIGW  240
HAFATSVKPE DASRVNYTNA RSGSEYEWSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1118726937219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1118726937219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1118726937219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1118726937219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095447.10.0single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-121WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A068TVJ00.0A0A068TVJ0_COFCA; Uncharacterized protein
STRINGXP_009599234.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-117ssDNA-binding transcriptional regulator