PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g13040

Common Name

GSCOC_T00032232001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 401aa MW: 45185.6 Da PI: 6.9041

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g13040	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2.1e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yL++k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Cc11_g13040 15 MLPGFRFHPTDEELVGFYLRRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 111 579*************************.89***********8888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg ktdW+mhe+rl Cc11_g13040 112 KCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-58	14	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.19	15	174	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDERNDSSEK LDEVMLPGFR FHPTDEELVG FYLRRKIQQR PLSIELIKQL DIYKYDPWDL 60 PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLSDTGP SKRYMDKNNI PANDAWAICR IFKKANSNAQ 180 RALSHSWISP VPQTTPTTTT SDFLTQNVYG TSNFSSSNMS LTTKTSSVIQ FGDSNSDLQQ 240 SSIASTFSPL DTSPYNSIVN QMSSNIEPSQ ISASKCDLPP TTTFPTIPIP TSEPLKYTID 300 ASSLLLNMSS SMFGDFDDKV SQDQYFHNFS ITVPDQETAL VNDPNVAQRD QLWGTMQPVG 360 YPFNFPLNMG DAWKSNLFWD SSPCPSSDMS TNFSTNKCYT *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDERNDSSEK LDEVMLPGFR FHPTDEELVG FYLRRKIQQR PLSIELIKQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLSDTGP SKRYMDKNNI PANDAWAICR IFKKANSNAQ  180
RALSHSWISP VPQTTPTTTT SDFLTQNVYG TSNFSSSNMS LTTKTSSVIQ FGDSNSDLQQ  240
SSIASTFSPL DTSPYNSIVN QMSSNIEPSQ ISASKCDLPP TTTFPTIPIP TSEPLKYTID  300
ASSLLLNMSS SMFGDFDDKV SQDQYFHNFS ITVPDQETAL VNDPNVAQRD QLWGTMQPVG  360
YPFNFPLNMG DAWKSNLFWD SSPCPSSDMS TNFSTNKCYT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-55	17	181	22	174	NAC domain-containing protein 19
3swm_B	7e-55	17	181	22	174	NAC domain-containing protein 19
3swm_C	7e-55	17	181	22	174	NAC domain-containing protein 19
3swm_D	7e-55	17	181	22	174	NAC domain-containing protein 19
3swp_A	7e-55	17	181	22	174	NAC domain-containing protein 19
3swp_B	7e-55	17	181	22	174	NAC domain-containing protein 19
3swp_C	7e-55	17	181	22	174	NAC domain-containing protein 19
3swp_D	7e-55	17	181	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152544.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-109	FEZ_ARATH; Protein FEZ
TrEMBL	A0A068TVM0	0.0	A0A068TVM0_COFCA; Uncharacterized protein
STRING	VIT_01s0026g02360.t01	1e-175	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]