PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g12890
Common NameGSCOC_T00032253001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 302aa    MW: 33997 Da    PI: 6.7935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g12890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.89.8e-182255134
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktile 34
                 kprl+WtpeLH rFv+av+qLGG++kAtPk++++
  Cc11_g12890 22 KPRLKWTPELHLRFVDAVNQLGGADKATPKSLMR 55
                 79*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-142055IPR009057Homeodomain-like
SuperFamilySSF466895.2E-62157IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-112257IPR006447Myb domain, plants
PfamPF143796.0E-22101147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSLQNQNLQT NDMALVLSSD AKPRLKWTPE LHLRFVDAVN QLGGADKATP KSLMRKYRLG  60
KSQQSQHYNE SKPEEERENQ RSHFTAEVCE ETQNQTNESL QIAQALHMQM EVQRKLYEQL  120
EVQRHLQLRI EAQGKYLQSV LKKAQETLAE YNTSAAGVEL AKAELSQLVS MVDIGCPTSS  180
LSALTEIEGP ILKDTDNKQL TSNGCSMESS LTSSESSGRK EQTQPMHEID EKGKCNRNNI  240
VLSLMEMQPG QNSRSNNQAS ERKRTGSNTS VEKPLPKRFQ PQRSDEQTGK FGFLETLDLN  300
R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097729.10.0myb family transcription factor PHL8-like isoform X1
SwissprotF4I2743e-60PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A068TVN40.0A0A068TVN4_COFCA; Uncharacterized protein
STRINGXP_008339891.11e-103(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-62G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]