PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g12870

Common Name

GSCOC_T00032255001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 463aa MW: 50272.8 Da PI: 7.7166

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g12870	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.9e-39	119	178	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ Cc11_g12870 119 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGSGRRKNKNT 178 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	108	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-32	121	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.956	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSELKDPEIK LFGKTISLPQ NTSVSSSVHA DHPDDRQSSS NTAASEDKKN TLGEELAENK 60 QEDDLSNPTA EELTERASIS GISDDHKTSS AENETLSPKN TNEELGDNNS SQEKTLKKPD 120 KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKNTCP 180 SSYRHIMVSD ALQAARGDGA NGLHLPALKA NGTVLTFGSE RPLCESMATV LNLAERPRNH 240 LPNGFHVPEQ RFSIPCGVRE IAKDRSTGSS STISNSTEKG GSVESVSNNC QGYIQAVPPF 300 SGPPWPSPGF PISFYPAPPF WGCAAPTPWN LPWLSPAPSS PDHSALSATP TSPTLGKHTR 360 NGNVLSPTNL LKEEETFDRK NAEGSILIPK TLRIDDPNEA AKSSIWSTLG IKNEKSESIN 420 RGSLFKAFPS KGDPKNRVAD TSLVLQANPA AFSRSQSFRE ST*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSELKDPEIK LFGKTISLPQ NTSVSSSVHA DHPDDRQSSS NTAASEDKKN TLGEELAENK  60
QEDDLSNPTA EELTERASIS GISDDHKTSS AENETLSPKN TNEELGDNNS SQEKTLKKPD  120
KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKNTCP  180
SSYRHIMVSD ALQAARGDGA NGLHLPALKA NGTVLTFGSE RPLCESMATV LNLAERPRNH  240
LPNGFHVPEQ RFSIPCGVRE IAKDRSTGSS STISNSTEKG GSVESVSNNC QGYIQAVPPF  300
SGPPWPSPGF PISFYPAPPF WGCAAPTPWN LPWLSPAPSS PDHSALSATP TSPTLGKHTR  360
NGNVLSPTNL LKEEETFDRK NAEGSILIPK TLRIDDPNEA AKSSIWSTLG IKNEKSESIN  420
RGSLFKAFPS KGDPKNRVAD TSLVLQANPA AFSRSQSFRE ST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097321.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A068TWC9	0.0	A0A068TWC9_COFCA; Uncharacterized protein
STRING	XP_009628724.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-90	cycling DOF factor 2