PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g12850
Common NameGSCOC_T00032257001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 452aa    MW: 49444.1 Da    PI: 8.0703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g12850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-16154199147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
      Cc11_g12850 154 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 199
                      899*****************************.***********996 PP

2Myb_DNA-binding56.56.6e-18206250147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
      Cc11_g12850 206 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 250
                      678*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.398149200IPR017930Myb domain
SMARTSM007174.6E-14153202IPR001005SANT/Myb domain
PfamPF002498.5E-16154199IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-28154247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25155207IPR009057Homeodomain-like
CDDcd001675.43E-13157198No hitNo description
PROSITE profilePS5129427.691201255IPR017930Myb domain
SMARTSM007171.3E-14205253IPR001005SANT/Myb domain
PfamPF002492.5E-14206249IPR001005SANT/Myb domain
CDDcd001671.30E-11208251No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20208254IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MANKQCSIYA PNTTSSINTG IDSYPSGASP FLCSSSLALS SPLSSSPPPS GSMGMIFEDM  60
SCLSISPNYL SSSRDSLHEG RPCWGFSFMP KCLLEESQNS DVGEGKGSSD CSDGFGETGN  120
QPIDLNADLS EEKQSNNLQA VGSRDSGQSK LCARGHWRPA EDTKLRELVA LYGPQNWNLI  180
AEKLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMAA HRLYGNKWAM IARLFPGRTD  240
NAVKNHWHVV MARKYREQSS AYRRRKMGQF VCGRVEDHDR SFVSRRDASA HIKTESTGPP  300
PPNYTLINNS NGTLLGNLTA CSSGGNLNGG VGAGGIGIAC GSNISPHMAS GGEAVLSNIV  360
PSRHTGFCSS QQTSSLFFSA GNCSNGMMSI FKQGRPWDRP RDESNVSYLC HHPVQQQIHH  420
PLLMTAMQQS QHCQSININT TTSFITTHYY H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-341542547107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096338.10.0myb-like protein AA
TrEMBLA0A068TWL50.0A0A068TWL5_COFCA; Uncharacterized protein
STRINGVIT_01s0026g02600.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-79myb domain protein 105