PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g12850 | ||||||||
Common Name | GSCOC_T00032257001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 452aa MW: 49444.1 Da PI: 8.0703 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 154 | 199 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Cc11_g12850 154 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 199 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 206 | 250 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ + Cc11_g12850 206 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 250 678*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.398 | 149 | 200 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-14 | 153 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-16 | 154 | 199 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-28 | 154 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 155 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.43E-13 | 157 | 198 | No hit | No description |
PROSITE profile | PS51294 | 27.691 | 201 | 255 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 205 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 206 | 249 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-11 | 208 | 251 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 208 | 254 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MANKQCSIYA PNTTSSINTG IDSYPSGASP FLCSSSLALS SPLSSSPPPS GSMGMIFEDM 60 SCLSISPNYL SSSRDSLHEG RPCWGFSFMP KCLLEESQNS DVGEGKGSSD CSDGFGETGN 120 QPIDLNADLS EEKQSNNLQA VGSRDSGQSK LCARGHWRPA EDTKLRELVA LYGPQNWNLI 180 AEKLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMAA HRLYGNKWAM IARLFPGRTD 240 NAVKNHWHVV MARKYREQSS AYRRRKMGQF VCGRVEDHDR SFVSRRDASA HIKTESTGPP 300 PPNYTLINNS NGTLLGNLTA CSSGGNLNGG VGAGGIGIAC GSNISPHMAS GGEAVLSNIV 360 PSRHTGFCSS QQTSSLFFSA GNCSNGMMSI FKQGRPWDRP RDESNVSYLC HHPVQQQIHH 420 PLLMTAMQQS QHCQSININT TTSFITTHYY H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 154 | 254 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096338.1 | 0.0 | myb-like protein AA | ||||
TrEMBL | A0A068TWL5 | 0.0 | A0A068TWL5_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0026g02600.t01 | 1e-140 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-79 | myb domain protein 105 |