PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g12480
Common NameGSCOC_T00032312001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 527aa    MW: 56985.9 Da    PI: 7.9608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g12480genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.8e-34234290259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++v+ei+Y+g+Hnh+
  Cc11_g12480 234 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSH-DGQVTEIIYKGQHNHQ 290
                  8****************************************.***************8 PP
2WRKY1079.6e-34413471159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Cc11_g12480 413 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 471
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-30229292IPR003657WRKY domain
SuperFamilySSF1182902.62E-26231292IPR003657WRKY domain
SMARTSM007741.3E-37233291IPR003657WRKY domain
PROSITE profilePS5081124.352234292IPR003657WRKY domain
PfamPF031068.5E-26234290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37398473IPR003657WRKY domain
SuperFamilySSF1182906.15E-30405473IPR003657WRKY domain
PROSITE profilePS5081139.192408473IPR003657WRKY domain
SMARTSM007742.9E-40413472IPR003657WRKY domain
PfamPF031062.5E-26414471IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAENDGSSSR APTRPTIILP PRTAMESLFT GGPGASPGPM TLVSSFFSDN DPDSECRSFS  60
QLLAGAMGSP VAVTALRQNF QQPGNSSSRE KVSSSGAGDA DFRFKQSRPT GLVVTQPAMF  120
TVPPGLSPAS LLDSPGFFSS GQGAFGLSHQ QVLAQVTAQA AQGEAHMQTP AEYPSLSSAP  180
APPSSQLQSL TSSTTTPQQM LPPVPDPNII KASSDVPQPD ERLQPSITVD KPADDGYNWR  240
KYGQKQVKGS EYPRSYYKCT HPSCPVKKKV ERSHDGQVTE IIYKGQHNHQ PPQHMKRAKD  300
SGNPNGTFNL QGNSELGSMG RSENLNMNRE GFPSHSLALK DQESSQATPE QVSGSSDSEE  360
VGNAENGVGT RDNDEPESKR RNIEVQTSEP ASSHRTVTEP RIIVQTTSEV DLLDDGYRWR  420
KYGQKVVKGN PYPRSYYKCT SQGCNVRKHV ERAASDPKAV ITTYEGKHNH DVPATKSSSH  480
STASMASELK PPTTLVNNQS LTRRAEFKNN GQQPIASLRF KEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-42234474878Probable WRKY transcription factor 4
2lex_A3e-42234474878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096695.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-180WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A068TVV40.0A0A068TVV4_COFCA; Uncharacterized protein
STRINGXP_009619961.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-157WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]