PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g11740
Common NameGSCOC_T00032406001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 452aa    MW: 50168.1 Da    PI: 7.1782
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g11740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.1e-41131207177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqv+gC++dls+ k+yh+rh+vC+vh+k+++v+++g+e+rfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q
  Cc11_g11740 131 VCQVHGCNKDLSSSKDYHKRHRVCDVHTKTAKVIINGIEKRFCQQCSRFHLLTEFDDGKRSCRKRLAGHNERRRKPQ 207
                  6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32126193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-39130209IPR004333Transcription factor, SBP-box
PfamPF031103.6E-31132205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPSFDRETVD NMEVLETDFS NRTEKLLFAN PGLGSSTDKT NDDSTNVIAS TSMVNFDPFL  60
WEGCASKISA AAAEPRTQKE SKFDPKLERQ TDSREADSLS CSKENLVSSL VEDSLPAKRA  120
RTTNLHSQFP VCQVHGCNKD LSSSKDYHKR HRVCDVHTKT AKVIINGIEK RFCQQCSRFH  180
LLTEFDDGKR SCRKRLAGHN ERRRKPQLGA HLGSEFLEMT LLKRTSFLSP ETFPAGFFYQ  240
ERFEKDNHGR HFKYVELPID NSQSAVALMN GQSGRVPIAD PHIIQKQQSP ETCIDTAVAV  300
ELSVIRDSSS ALSLLSTQSQ NTSSGAAGIS MALLPVNGVR HHAYESTKQN SAKNLGINTA  360
KGSASSGYSC GTIDEEGMVR VRDGSMPVSF RVQREGTFQV SDYRHANCSP SLEVGTLDLL  420
QLSTHLKRVE QQRNFLQVEE ENETFCCSSN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28127205684squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095530.10.0squamosa promoter-binding-like protein 6
TrEMBLA0A068TVY40.0A0A068TVY4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-51SBP family protein