PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g10650
Common NameGSCOC_T00032550001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 318aa    MW: 34819.2 Da    PI: 6.6071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g10650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14134180354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Cc11_g10650 134 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 180
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15135187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-5144183No hitNo description
Gene3DG3DSA:3.30.70.2607.5E-5217273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQQHNSTDAY LAAAGGGRSS GGGGLMFPEV SPILPWTIPQ VHSFNPVHQF RDHDPFLLPP  60
PPSPYGGLFN RRPPPPGLQF AYEGSSSDHL RLISDTCLGQ VVQASSAAPF GLQAELQKMT  120
AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSLLPN TTKTDKASLL AEVIQHVKEL  180
KRQTSLIAES TPVPTEIDEL TVDNASDEDG KLVIRASLCC EDRSDLLPDL IKTLKSLRLR  240
TLKAEITTLG GRVKNVLFIT GEDDTDSDDQ QQQQQYSISS IQEALKAVME KTNGDESGSG  300
NVKRQRTNIN ILEHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11523GGRSSGGGG
2139144ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095452.10.0transcription factor bHLH30-like isoform X1
RefseqXP_027095453.10.0transcription factor bHLH30-like isoform X2
RefseqXP_027095454.10.0transcription factor bHLH30-like isoform X2
RefseqXP_027097475.10.0transcription factor bHLH30-like isoform X1
RefseqXP_027097476.10.0transcription factor bHLH30-like isoform X2
RefseqXP_027097477.10.0transcription factor bHLH30-like isoform X2
RefseqXP_027153722.10.0transcription factor bHLH30 isoform X1
RefseqXP_027153723.10.0transcription factor bHLH30 isoform X2
RefseqXP_027153724.10.0transcription factor bHLH30 isoform X2
RefseqXP_027153725.10.0transcription factor bHLH30 isoform X2
SwissprotQ9S7Y11e-100BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A068TXB10.0A0A068TXB1_COFCA; Uncharacterized protein
STRINGcassava4.1_010668m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]