PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g10530
Common NameGSCOC_T00032565001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 286aa    MW: 32151.8 Da    PI: 6.729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g10530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.2e-06122141120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  n++ H+
  Cc11_g10530 122 FSCPVCNKTFNRYNNMQMHM 141
                  89*****************9 PP
2zf-C2H216.72.1e-05207229123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+F  + + ++H +++
  Cc11_g10530 207 FQCRKCGKPFAVRGDWRTHEKNC 229
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-5118144No hitNo description
Gene3DG3DSA:3.30.160.605.1E-7122141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.025122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305122149IPR007087Zinc finger, C2H2
PfamPF128746.5E-5122141No hitNo description
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SMARTSM00355200170202IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.94E-6190227No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5193227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538207227IPR007087Zinc finger, C2H2
SMARTSM0035546207227IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQRIHCCSNI SSGETDEIGS LEADDQDDDS LTLLSLAPPG QNNTSKNLLD CSFEYSSSQL  60
PQDNYQQCPR TNAENGVTVA LHIGLPTSEA SSTSHAHNFG VLPEGQYWIP TPAQILVGPT  120
QFSCPVCNKT FNRYNNMQMH MWGHGSQYRK GPESLRGTKP ASSMLKLPCY CCAEGCKNNI  180
DHPRSRPLKD FRTLQTHYKR KHGTKPFQCR KCGKPFAVRG DWRTHEKNCG KLWFCICGSD  240
FKHKRSLKDH IRAFGDGHAA HSQDLRGIEE LVELEEDDEE EEDNY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095628.10.0zinc finger protein WIP6
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A068TWE90.0A0A068TWE9_COFCA; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-117C2H2-like zinc finger protein