PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g10210
Common NameGSCOC_T00032607001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 382aa    MW: 42304.1 Da    PI: 4.3423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g10210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19122171154
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                  ++ykGVr++k +g+W+AeIrd +     + kr++lg++ ++eeA +a++a r+++e
  Cc11_g10210 122 TKYKGVRQRK-WGKWAAEIRDpF-----KgKRIWLGTYISPEEASRAYEAKRLEFE 171
                  69*******9.**********55.....45***********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-23122170No hitNo description
PfamPF008478.2E-12122172IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-16123170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-20123172IPR001471AP2/ERF domain
SMARTSM003803.5E-18123196IPR001471AP2/ERF domain
PROSITE profilePS5103220.099123181IPR001471AP2/ERF domain
PRINTSPR003672.1E-8124135IPR001471AP2/ERF domain
PRINTSPR003672.1E-8146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPEPRRQVIL NQEHHNKRPK IMAEPTRPVR KIRVFCDDPD ATDTDSSDDE RVIEKKPKRF  60
LREIILPIVE LKSQPGQPVA VALAPEAENS CQESNNGEKN NPKKKKGLAK PLSQPQSKPS  120
STKYKGVRQR KWGKWAAEIR DPFKGKRIWL GTYISPEEAS RAYEAKRLEF EARAMADQNA  180
SEKCSNVNDD NNNNQSSSMA VSQPHNQNEA PACVSEDSAE SLVSHTSPAS VLELDCLTSS  240
ATPAMASVDG EKQDEEEKVK NVAEGTKVVE QKVPDLDLMM EDELSLAELA QGMELDFELN  300
SLFMGEEEFG QSLGDFVIGD IEDIPICGFE DDQPSALPDF DFEFDFDACN EAFSWMDDGP  360
ALMNGASPLE NQHSVPISFA A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096970.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A068TZ380.0A0A068TZ38_COFCA; Uncharacterized protein
STRINGSolyc05g009450.1.16e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-23ERF family protein