PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g09930 | ||||||||
Common Name | GSCOC_T00032649001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31997.7 Da PI: 7.7525 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ G g+W++ a++ g++Rt+k+c++rw++yl Cc11_g09930 26 RGPWTLEEDNLLIHYITCNGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Iar+++ gRt++++k++w++ Cc11_g09930 79 RGNLTPQEQLLILELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 122 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.995 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-30 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-9 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 25.739 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.47E-11 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSKGRITTKS TSNPNEEEGS SIDLRRGPWT LEEDNLLIHY ITCNGEGRWN SLAKCAGLKR 60 TGKSCRLRWL NYLKPDIRRG NLTPQEQLLI LELHSKWGNR WSKIARHLPG RTDNEIKNYW 120 RTRVQKQARQ LNVDSNSKKF LEAIKCFWMP RLLEKMEQSS SLSSSSSISS ISTPDNHNSA 180 SPSLATNKTP LASSSPLADS KKCSSDSNNS ACNNSIEGDS CYHIFSHYQP PEMSAEAMES 240 PDMNFSECQI SEADNWFNDD MSAGAFWNTD ELWHFRKPEV GI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 23 | 128 | 4 | 108 | B-MYB |
1h8a_C | 3e-24 | 23 | 128 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096683.1 | 0.0 | transcription factor MYB62-like | ||||
Swissprot | Q9C9G7 | 2e-92 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A068TWL8 | 0.0 | A0A068TWL8_COFCA; Uncharacterized protein | ||||
STRING | XP_009626235.1 | 1e-113 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-89 | myb domain protein 62 |
Publications ? help Back to Top | |||
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