PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g09930
Common NameGSCOC_T00032649001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 283aa    MW: 31997.7 Da    PI: 7.7525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g09930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++  G g+W++ a++ g++Rt+k+c++rw++yl
      Cc11_g09930 26 RGPWTLEEDNLLIHYITCNGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP

2Myb_DNA-binding53.46e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Iar+++ gRt++++k++w++
      Cc11_g09930  79 RGNLTPQEQLLILELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9952173IPR017930Myb domain
SuperFamilySSF466892.28E-3023120IPR009057Homeodomain-like
SMARTSM007174.3E-132575IPR001005SANT/Myb domain
PfamPF002494.4E-152673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212780IPR009057Homeodomain-like
CDDcd001671.09E-92873No hitNo description
PROSITE profilePS5129425.73974128IPR017930Myb domain
SMARTSM007174.1E-1578126IPR001005SANT/Myb domain
PfamPF002491.8E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2381127IPR009057Homeodomain-like
CDDcd001672.47E-1183122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSKGRITTKS TSNPNEEEGS SIDLRRGPWT LEEDNLLIHY ITCNGEGRWN SLAKCAGLKR  60
TGKSCRLRWL NYLKPDIRRG NLTPQEQLLI LELHSKWGNR WSKIARHLPG RTDNEIKNYW  120
RTRVQKQARQ LNVDSNSKKF LEAIKCFWMP RLLEKMEQSS SLSSSSSISS ISTPDNHNSA  180
SPSLATNKTP LASSSPLADS KKCSSDSNNS ACNNSIEGDS CYHIFSHYQP PEMSAEAMES  240
PDMNFSECQI SEADNWFNDD MSAGAFWNTD ELWHFRKPEV GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24231284108B-MYB
1h8a_C3e-242312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096683.10.0transcription factor MYB62-like
SwissprotQ9C9G72e-92MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A068TWL80.0A0A068TWL8_COFCA; Uncharacterized protein
STRINGXP_009626235.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-89myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]