PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g08820 | ||||||||
Common Name | GSCOC_T00032822001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 27932.3 Da PI: 7.5848 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.5e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed+ l d++k++G g+W+ I++ g+ R++k+c++rw +yl Cc11_g08820 13 KGAWSQQEDQMLTDYIKKHGEGHWRNIPKAAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Cc11_g08820 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.082 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.725 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTKPCCDKED MNKGAWSQQE DQMLTDYIKK HGEGHWRNIP KAAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRKKLKSMGI 120 DPKHLRLSHY LARHRIHGFT AGETSSAIKN YQPSPHDQIK SSGIASDQHQ VSDAGSCVDD 180 DDSSTILPDL NVDIASDSCL PSGATTEEKK ASTSLPSEDA VNEKTKDEQY LTSRQPEQPL 240 SPTLPLFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | LRKKLKS |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ126857 | 6e-84 | KJ126857.1 Malus hybrid cultivar MYB2 (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096766.1 | 0.0 | transcription repressor MYB6-like | ||||
Swissprot | Q9S9K9 | 3e-69 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A068TXJ6 | 0.0 | A0A068TXJ6_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0011g04760.t01 | 5e-95 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-71 | myb domain protein 3 |