PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g07720
Common NameGSCOC_T00018013001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 650aa    MW: 70525.1 Da    PI: 6.8213
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g07720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.6e-28203256155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Cc11_g07720 203 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 256
                  79*******************.********************************8 PP
2Response_reg74.44.2e-25211291109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+q+l+k  y  v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ +  +++ + ++ Ga 
   Cc11_g07720  21 VLVVDDDIICLRILEQMLRKCMY-MVTTCSQATVALNLLRERKgfFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDDRTSLVMRGIRHGAC 115
                   89*********************.*****************999********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel +
   Cc11_g07720 116 DYLIKPIRTEELKN 129
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-4018154No hitNo description
SuperFamilySSF521725.69E-3418139IPR011006CheY-like superfamily
SMARTSM004487.1E-2819131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.39920135IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-2221129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.89E-2622134No hitNo description
SuperFamilySSF466891.79E-19200260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29200261IPR009057Homeodomain-like
PROSITE profilePS5129411.264200259IPR017930Myb domain
TIGRFAMsTIGR015571.4E-24203256IPR006447Myb domain, plants
PfamPF002492.1E-6205254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MASACKEAVP VPEQFPVGLK VLVVDDDIIC LRILEQMLRK CMYMVTTCSQ ATVALNLLRE  60
RKGFFDIVLS DVHMPDMDGF KLLELVGLEM DLPVIMMSGD DRTSLVMRGI RHGACDYLIK  120
PIRTEELKNI WQHVVRKRCN VGKEHEHSGG PEDNDRPKNG IDDAEYTSSF NEGAAEKSLK  180
RRKDTKEEDD TEIENDDPTT SKKPRVVWSV ELHQQFVSAV NHLGIDKAVP KRILELMNVP  240
GLTRENVASH LQKFRLYLKR LSGVAQQQAG LPSSFCGALE PNPKVGSLGR FDIQALAASG  300
NIPPQTLAAL HAEFLNRPTG NLVLPGMDQT NLLQASLPVS KCIALDQNVA YGQPLMKCPS  360
NMSKQFSQTV TSADNTHSGP GAWPSKNLVN VGNCDSFAGL TAQNGNVMLS VMQRQQQQHR  420
QQQEQPQKHS TLQEPSRLIN VQPSCLVVPS HSSANFHTGN GLASVNQSCS LSGTSIIDYS  480
ILSPQSNISS LNSGRMGDAE IKPASMLGGL SGAGSISPTL SSGSVNADNG VGIHVQNSAS  540
RFGPARQLSA IVPNMSALQD SYDTSGQMFE HGMLKSTAFV GRGTSIPSRF AVDEAGWLVG  600
NLNQEKMYGE NNANNVKQEP NMNLVENAKV GAPMLRRLSP ADVMSVFSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-24199262164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182KSLKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097499.10.0two-component response regulator ORR21-like
SwissprotA2XE311e-156ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-156ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A068V6820.0A0A068V682_COFCA; Uncharacterized protein
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-118response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]