PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g07710
Common NameGSCOC_T00018015001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 311aa    MW: 35473.6 Da    PI: 7.7624
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g07710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26210260455
      G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  + W+ eLH++Fv+av++L G++kAtPk+i+elm+v+gLt+e+v+ HLQkYRl
  Cc11_g07710 210 VIWSIELHQQFVSAVNHL-GIDKATPKKIMELMNVPGLTRENVANHLQKYRL 260
                  67****************.********************************8 PP
2Response_reg67.94.4e-23211291109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+q+l++  y +v+++++++ al+ll+ek+  +D++l  +  p+mdG++ll+     e++lp+i+++  +  + +++ +  Ga 
   Cc11_g07710  21 VLVVDDDLTCLKILEQMLTRCMY-RVTTCSQATVALNLLREKKgfFDIVLSEVHVPDMDGFKLLELVSL-EMNLPVIMMSVDDRTSIVVKGIMQGAC 115
                   89*********************.******************99********************87765.569************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel +
   Cc11_g07710 116 DYLIKPIRFEELKN 129
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.7E-1305273IPR017053Response regulator B-type, plant
SuperFamilySSF521723.13E-3118143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-3818155No hitNo description
SMARTSM004487.4E-2519131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.60520135IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-2021129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.66E-2322134No hitNo description
SuperFamilySSF466893.05E-18204264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-27205265IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-22210260IPR006447Myb domain, plants
PfamPF002492.2E-7212259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MATACKEALP VPLPFPAGLK VLVVDDDLTC LKILEQMLTR CMYRVTTCSQ ATVALNLLRE  60
KKGFFDIVLS EVHVPDMDGF KLLELVSLEM NLPVIMMSVD DRTSIVVKGI MQGACDYLIK  120
PIRFEELKNI WQHVVRKRCN KGKEHEHLGT MEDYDHRKHE SDEATYAYSV SNKGADGEPE  180
TSTKKRKDAK QKDDTEIGKD DLITSKKMPV IWSIELHQQF VSAVNHLGID KATPKKIMEL  240
MNVPGLTREN VANHLQKYRL YLTRLKELPI LEKEHMPPSL LHLHIFCCPL LHLHNILNPK  300
RCSCLLLTPW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18204265163ARR10-B
5lxu_A9e-19210262456Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096467.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_027099453.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_027099994.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_027152342.10.0two-component response regulator ORR21-like
SwissprotA2XE311e-106ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-106ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A068V6K60.0A0A068V6K6_COFCA; Uncharacterized protein
STRINGXP_010274996.11e-122(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-100response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]