PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g06670
Common NameGSCOC_T00020691001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 383aa    MW: 43476.9 Da    PI: 4.7604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g06670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35141072103
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+ye+++de+++elisws +++nsf+++d ++f++++Lpk+Fkhsnf+SFvRQLn+YgF+k+++++         weF++++F kg+++ll++i
   Cc11_g06670  14 FLLKIYEMVSDESTDELISWSqTHSNSFIIWDVSRFSSELLPKHFKHSNFSSFVRQLNIYGFHKSDTDR---------WEFSNDEFVKGQRHLLKNI 101
                   9********************8888****************************************9999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                    r+k++
   Cc11_g06670 102 VRRKQT 107
                   ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-319104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5110104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2914104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVKSLENGSS VAPFLLKIYE MVSDESTDEL ISWSQTHSNS FIIWDVSRFS SELLPKHFKH  60
SNFSSFVRQL NIYGFHKSDT DRWEFSNDEF VKGQRHLLKN IVRRKQTPAQ AQRKSSQQKD  120
ADPGASEEDR RTALRKEVET LKIDKNTLMQ ELIKLKQHQQ TSQSKLVLVR DQLKGMEKNQ  180
QQMLSFIVMV MQNPGFFIQL LQPKENNWRA AETGKHKFST VDDDCEPLSS DGAIIRYQLP  240
ANEPSEPPCI APSSSSEKPV ELDLSDEIRD LLLSVDFTPL PLDEKMLSLE NHGPLVLPDS  300
PGGDFLMDQL LLSCPLAESK DTDEPDSEVY LDTGMDIESA FQAQESNKLK SPKDGSNQNR  360
WVDTTGIRKQ LDNLESLDFL TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22910424129Heat shock factor protein 1
5d5v_B3e-22910424129Heat shock factor protein 1
5d5v_D3e-22910424129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100821.10.0heat stress transcription factor A-8-like isoform X1
TrEMBLA0A068UBK30.0A0A068UBK3_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000450891e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.18e-83heat shock transcription factor A8