 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc11_g05650 |
| Common Name | GSCOC_T00020529001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31056.5 Da PI: 10.1454 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc11_g05650 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 355.1 | 1.5e-108 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mdddg + rn+gyyep+ slk nl+lqlmss+a+rd+k+ r++ + + + ++++++rd m++ rd+++++ ++k++++
Cc11_g05650 1 MDDDGLNMRNWGYYEPS-SLKGNLALQLMSSVADRDTKPflsgRDSGV-MGAANGVYHPRDylisgapdhMDY-VRDSWINH--------RDKFVHMF 87
9*****99********9.***********************9888888.999*********************.9******9........78999999 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ ++ +vl++t+ ++++q+l+ ++ e +k +e + + ke kkr+ ++pk++k+kk+kk+++++k++ ++++
Cc11_g05650 88 PG--------NPYNTVLPETSGTHQMQMLQ-----QP-----EPSKDARVS-VEDVGVRKEPGPAKKRAAVSVPKTPKSKKPKKNPAVPKENGSSSG- 165
93........3578899*******999922.....22.....222223333.455889999999999*****************9999988888888. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
+rska kks+d+v+ng++lD+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++n
Cc11_g05650 166 -QRSKAVKKSMDVVINGIDLDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFAN 262
.89*********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DL++hWAkHGtnkfvtir
Cc11_g05650 263 PIDLRSHWAKHGTNKFVTIR 282
*******************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSSLK GNLALQLMSS VADRDTKPFL SGRDSGVMGA ANGVYHPRDY 60
LISGAPDHMD YVRDSWINHR DKFVHMFPGN PYNTVLPETS GTHQMQMLQQ PEPSKDARVS 120
VEDVGVRKEP GPAKKRAAVS VPKTPKSKKP KKNPAVPKEN GSSSGQRSKA VKKSMDVVIN 180
GIDLDISGIP IPVCSCTGTP QQCYRWGCGG WQSACCTTTI SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAEGYNF ANPIDLRSHW AKHGTNKFVT IR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
