PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g03760 | ||||||||
Common Name | GSCOC_T00033972001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 182aa MW: 21000.9 Da PI: 7.5617 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.2 | 2.1e-16 | 27 | 77 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q+++Le++F+ +++p+++e+++L+ +lgL+ q+k+WFqN+R + k Cc11_g03760 27 RHSAQQIQRLEAFFKTSQHPTKDEKQQLSIELGLSFGQIKFWFQNKRNQIK 77 6899*******************************************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 7 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.26E-17 | 8 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-13 | 19 | 83 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.953 | 19 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.37E-14 | 26 | 77 | No hit | No description |
Pfam | PF00046 | 8.9E-14 | 27 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDFAYSGDGS SDEASVDTGK KKEQFRRHSA QQIQRLEAFF KTSQHPTKDE KQQLSIELGL 60 SFGQIKFWFQ NKRNQIKLRN EREQNDALTL ENEKLRVENL ILRGMLMDPF CTKCHGGLTE 120 EETRKLHLQG LANENAKLKK EVDSSFHVFE LSKILAMESI FFSVLPFFSF ELCSLMKKLD 180 S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845089.1 | 4e-39 | PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X3 | ||||
Refseq | XP_027097544.1 | 4e-40 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A068USU7 | 1e-129 | A0A068USU7_COFCA; Uncharacterized protein | ||||
STRING | Migut.H02245.1.p | 6e-38 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13886 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 9e-33 | homeodomain GLABROUS 11 |