PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc11_g03720 | ||||||||
Common Name | GSCOC_T00033966001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 176aa MW: 20570.5 Da PI: 8.8641 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.4 | 2.1e-12 | 33 | 77 | 7 | 56 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++q+++Le+ ++p+++e+++L+++lgL+ q+k+WFqN+R + k Cc11_g03720 33 HSAQQIQRLEA-----QHPTKDEKQQLSTELGLSSGQIKFWFQNKRNQIK 77 67777888775.....89****************************8766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 15 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-5 | 27 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.46E-11 | 31 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.37E-9 | 31 | 77 | No hit | No description |
Pfam | PF00046 | 9.6E-10 | 33 | 77 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.05 | 44 | 79 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MAMFIRREAQ LFHSNPSKAW TQEQKNQEQV RRHSAQQIQR LEAQHPTKDE KQQLSTELGL 60 SSGQIKFWFQ NKRNQIKLRN EREENDALTL ENEKLRMENL IMRGMLMDPY CKKCHGGLTE 120 EETRKLHLQG LANENAKLKK EVDSSFHVFE LSKILATESI FFSLSYPFFL LNCAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027097544.1 | 1e-36 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A068UT54 | 1e-126 | A0A068UT54_COFCA; Uncharacterized protein | ||||
STRING | Migut.H02245.1.p | 5e-28 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13886 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 4e-26 | homeodomain GLABROUS 11 |