PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g03070
Common NameGSCOC_T00025477001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 440aa    MW: 49386.4 Da    PI: 8.9722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g03070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16113159148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  l+++vk +G + W+ Ia++m  gR +kqc++rw+++l
      Cc11_g03070 113 KGQWTEEEDNTLKRLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 159
                      799*****************************.*************97 PP
2Myb_DNA-binding55.41.4e-17165207145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W+ eE+ llv+a+ q G++ W+ Ia++++ gRt++++k++w+
      Cc11_g03070 165 KDTWSLEEERLLVEAHMQVGNR-WAEIAKRIP-GRTENSIKNHWN 207
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.081108163IPR017930Myb domain
SuperFamilySSF466897.86E-30111206IPR009057Homeodomain-like
SMARTSM007175.2E-16112161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-26114167IPR009057Homeodomain-like
CDDcd001672.70E-15116159No hitNo description
PfamPF139218.9E-18116176No hitNo description
PROSITE profilePS5129419.284164214IPR017930Myb domain
SMARTSM007175.5E-17164212IPR001005SANT/Myb domain
CDDcd001672.37E-13167210No hitNo description
Gene3DG3DSA:1.10.10.604.3E-20168212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEEVSFLKPK PTLTAIDKFL LGQSHFCQPE ILANFKNKGN LVPVNFDFVS SSTSGGAIHS  60
HAREGEGLFP RPTILPPPHD TSSFVNGEED LEPRVCRRVG RRGKSGPSVA LIKGQWTEEE  120
DNTLKRLVKH FGVKKWAQIA EKMVGRAGKQ CRERWHNHLR PDIKKDTWSL EEERLLVEAH  180
MQVGNRWAEI AKRIPGRTEN SIKNHWNATK RRQNSKRRVK KPEGAQNGRN QSTILQEYIK  240
STCSNNNFLT TISADLRSTT VTPANKVCQS TCDDSSFYMT QQSYDDEMKF MQNLFGSNNL  300
NASSFGENDN RKAPLDTGID RKNKCYISFN AFGYNSSSSD NQSFGGNWDY GIFPSYAEPN  360
MPTKPHLGDQ ENNQSASMYL DLYLPRILDG SNAITAPPDP SKMSMETVIM DRASPSVGKE  420
VDLIEMVSNS QFAHKNAAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-421112132104C-Myb DNA-Binding Domain
1msf_C5e-421112132104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099056.10.0transcription factor MYB119-like
TrEMBLA0A068UHJ00.0A0A068UHJ0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-66myb domain protein 119