PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g02160
Common NameGSCOC_T00033017001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 544aa    MW: 60526.6 Da    PI: 4.9629
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g02160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK612.2e-19382430452
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   i+ e+l+++ s +++dAAk Lgv+ ++LKriCR+yGI+RWP Rk +++
  Cc11_g02160 382 GITREVLEQNSSRNLEDAAKVLGVSRSTLKRICREYGINRWPPRKARKV 430
                  6999*****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.049364450IPR003035RWP-RK domain
PfamPF020423.5E-17383430IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.607.1E-6385419IPR009057Homeodomain-like
SuperFamilySSF542777.2E-15460542No hitNo description
PROSITE profilePS5174517.115463543IPR000270PB1 domain
SMARTSM006666.2E-9463543IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2408.8E-15464542No hitNo description
PfamPF005644.4E-12464542IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MYLPESTMDG ESDNYLSKPR ASQDGEIARI EEVLDEVIEV CELDDDDDTE TWTTSGEILS  60
SHRGVDFIRK GQGVVGRAFS SKSACFCRDI RQLSITEYPL VAQARSWKNY ACFAVCLRSS  120
CSNNCIYVLE FLLHKNQIDH GDPRTLLNSI METLKERLGS SFKIASGQEL GQKLTVEVIK  180
VSPEDEFDSF EIYNTTGVEC TPRLREVQGG EGMMQLDFSS KQVDAANGSM NGIHEQQNGS  240
VGSIPRFAKA QGGEGMVQLD FDAANAYING VHGQQSGIVG SPPRPERAQG FINISHQELN  300
IAGVDVAHNS MNGIYEQNNG IVESPTRQQL PQNIENTAHD EGNTEINVAN PKRGGASIDQ  360
SGNEVSNVKK QKSICTLKSE LGITREVLEQ NSSRNLEDAA KVLGVSRSTL KRICREYGIN  420
RWPPRKARKV NQAFAEQRVV RPSTENTEER HRPDTARLGD DSSIWVKAEY QGYTMKFRLP  480
LSASKFNLEE KVAQRLNPMI GSFKIEYQDE ENEWIWIACD EDLSTCMSTL SSLGRTTIKM  540
LVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067017.10.0protein NLP3-like isoform X1
TrEMBLA0A068URZ20.0A0A068URZ2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.16e-23Nin-like family protein