PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g00490
Common NameGSCOC_T00007401001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 296aa    MW: 31323.8 Da    PI: 7.7802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g00490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++
      Cc11_g00490 11 WSREQDKAFENALATYPEDsadRWEKIAADVP-GKSLEEIKHHY 53
                     ********************************.**********9 PP
2Myb_DNA-binding43.85.9e-14121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Cc11_g00490 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.811661IPR017884SANT domain
SMARTSM007178.7E-9759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-5857IPR009057Homeodomain-like
SuperFamilySSF466894.69E-111065IPR009057Homeodomain-like
PfamPF002492.4E-81153IPR001005SANT/Myb domain
CDDcd001674.38E-91153No hitNo description
PROSITE profilePS5129417.61113170IPR017930Myb domain
SuperFamilySSF466898.28E-17116171IPR009057Homeodomain-like
SMARTSM007174.5E-11118168IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-17118168IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.2E-11121164IPR009057Homeodomain-like
CDDcd001671.28E-10121166No hitNo description
PfamPF002497.3E-12121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTADESTSAV WSREQDKAFE NALATYPEDS ADRWEKIAAD VPGKSLEEIK HHYEILVDDV  60
NRIESGCVPL PSYSSCLDGS TSQAGDEGTG KKSGNLGHFS SESNHGGKAS RSDQERRKGI  120
AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNTG DVSVPQGPIT GQTNGPAASG SSAKSNKPPS QAPTAAPGVG MYGTTTIGQP  240
VGGPLVSAVG TPVNLPPAAH MAYGVRAPVP GTMVPGAPVA MGPVTYPMSH TSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1811761176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097519.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-126SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068VFI40.0A0A068VFI4_COFCA; Uncharacterized protein
STRINGEOX990471e-171(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-129MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]