PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g15850 | ||||||||
Common Name | GSCOC_T00033786001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25597.5 Da PI: 6.7735 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs tgkl+e++s Cc10_g15850 9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 52.8 | 1.8e-18 | 91 | 171 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +L ke+ +++R+++GedL+ L+++eLqqLe+ Le +l+++ ++K e ++++i+ lqkk el eenk+L++k++ Cc10_g15850 91 SCHVRLSKEVADRTHQLRQMKGEDLQGLKIEELQQLEKVLEAGLTRVLQTKGERIMNEINALQKKGAELFEENKQLKQKMA 171 4466889999999999**************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.716 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-30 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.23E-32 | 12 | 77 | No hit | No description |
PRINTS | PR00404 | 3.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.199 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.9E-15 | 94 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA TGKLFEFASS 60 SMSDILGKYK LHSSNLEKTE QPSLELQLEN SCHVRLSKEV ADRTHQLRQM KGEDLQGLKI 120 EELQQLEKVL EAGLTRVLQT KGERIMNEIN ALQKKGAELF EENKQLKQKM AMLYEGKRPV 180 IPDLDKDMLI EEGQSSESIT NVCSCNSGPP PEDDCSDTSL KLGLPFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU332283 | 0.0 | GU332283.1 Coffea arabica MADS-box protein STMADS11 subfamily (C10) mRNA, complete cds. | |||
GenBank | KJ483241 | 0.0 | KJ483241.1 Coffea arabica SVP-2 (SVP-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092989.1 | 1e-165 | MADS-box protein SVP-like | ||||
Refseq | XP_027092990.1 | 1e-165 | MADS-box protein SVP-like | ||||
Swissprot | Q9FVC1 | 5e-97 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A068USU0 | 1e-164 | A0A068USU0_COFCA; Uncharacterized protein | ||||
TrEMBL | E9JTW2 | 1e-164 | E9JTW2_COFAR; MADS-box protein STMADS11 subfamily | ||||
STRING | EOY15444 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-99 | MIKC_MADS family protein |