PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g15260

Common Name

GSCOC_T00033701001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 435aa MW: 49409.4 Da PI: 6.5131

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g15260	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	247.3	6e-76	59	427	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetsekn....sseelaalklfsevsPilkfshl 96 lL ++Ae v++++ +a++lL as++g+p+qR++ +f+eAL++++ +++ + l + ++ + ++ a+ + ++ +P+ f+ + Cc10_g15260 59 LLQAAAEKVANQQYVQARKLLILCGCFASKSGSPVQRVVYCFAEALEKKIEQEWGIApTEELVGKLRKPLDemlaQVYMQPAMMTSQQETPFTLFTEF 156 678899*******************************************9764321222322222222222223444445566999****** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 ta + Il+av++++rvH iDf+i++G++W ++qaLa R e p +l+i +vg sk+ +eetg+ L++fAe+l++pf++++ v+++l+dl+ + Cc10_g15260 157 TATESILNAVASAKRVHLIDFQINNGAHWTLIMQALAVRYECPFeHLKISAVGT----SKKIMEETGKWLSSFAETLNLPFSYKM-VVSDLKDLRENY 249 ***********************************966545*****....9**********************.7999**** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++++ +E la+ + ++l + l +++ ++++ ++++l+P++vvv e ea++n+++F erf al +sa+fd++++ + ++ r++ E++++ Cc10_g15260 250 FELEFDEELAIYSDMRLWTQL----VWPNHLKALMGVIRKLKPRIVVVKEFEANTNAPNFPERFDAALLLFSAMFDCINSCMDHHVLYRKMTEEVIFP 343 ***********999998....45555667*********************************************9999******** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++n++ +eg er++rhe+ + Wr+ + e+G+ + l+ + ++a+l lr + +v+ + ++l++gWk+ p s+SaW+ Cc10_g15260 344 RMVQNIIVAEGMERFQRHEKIGFWRKLFAEFGMAETDLTRSSLCEASLFLRSSErLSSCTVDMDGKCLIMGWKGAPFQSLSAWK 427 **************************************************9888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.93	30	406	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-73	59	427	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDTSHHPALS TASLMKAAKA QLFKFNSQKI DVLSYVSSHI GTLSGLRSEV PGDLELALLL 60 QAAAEKVANQ QYVQARKLLI LCGCFASKSG SPVQRVVYCF AEALEKKIEQ EWGIAPTEEL 120 VGKLRKPLDE MLAQVYMQPA MMTSQQETPF TLFTEFTATE SILNAVASAK RVHLIDFQIN 180 NGAHWTLIMQ ALAVRYECPF EHLKISAVGT SKKIMEETGK WLSSFAETLN LPFSYKMVVS 240 DLKDLRENYF ELEFDEELAI YSDMRLWTQL VWPNHLKALM GVIRKLKPRI VVVKEFEANT 300 NAPNFPERFD AALLLFSAMF DCINSCMDHH VLYRKMTEEV IFPRMVQNII VAEGMERFQR 360 HEKIGFWRKL FAEFGMAETD LTRSSLCEAS LFLRSSERLS SCTVDMDGKC LIMGWKGAPF 420 QSLSAWKLQN EYEI*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDTSHHPALS TASLMKAAKA QLFKFNSQKI DVLSYVSSHI GTLSGLRSEV PGDLELALLL  60
QAAAEKVANQ QYVQARKLLI LCGCFASKSG SPVQRVVYCF AEALEKKIEQ EWGIAPTEEL  120
VGKLRKPLDE MLAQVYMQPA MMTSQQETPF TLFTEFTATE SILNAVASAK RVHLIDFQIN  180
NGAHWTLIMQ ALAVRYECPF EHLKISAVGT SKKIMEETGK WLSSFAETLN LPFSYKMVVS  240
DLKDLRENYF ELEFDEELAI YSDMRLWTQL VWPNHLKALM GVIRKLKPRI VVVKEFEANT  300
NAPNFPERFD AALLLFSAMF DCINSCMDHH VLYRKMTEEV IFPRMVQNII VAEGMERFQR  360
HEKIGFWRKL FAEFGMAETD LTRSSLCEAS LFLRSSERLS SCTVDMDGKC LIMGWKGAPF  420
QSLSAWKLQN EYEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	86	427	33	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093864.1	0.0	DELLA protein GAI-like
TrEMBL	A0A068USZ7	0.0	A0A068USZ7_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8500	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	5e-46	GRAS family protein