PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g15100
Common NameGSCOC_T00033677001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 326aa    MW: 34985.3 Da    PI: 8.7371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g15100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20110159255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Cc10_g15100 110 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 159
                  7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-14110159IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23110168IPR016177DNA-binding domain
SMARTSM003806.3E-37110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-33110168IPR001471AP2/ERF domain
PROSITE profilePS5103225.712110167IPR001471AP2/ERF domain
PRINTSPR003677.4E-12111122IPR001471AP2/ERF domain
CDDcd000184.08E-15118169No hitNo description
PRINTSPR003677.4E-12133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSFGGAGSVI QSANSPSSAY SSSSSGSWAG QKRGRDQEET VSGYPEHAQR VYRGFEDFRS  60
GESSSAKAAM LDEAASVITP TTTASTIATT VQSQNPPAEA AEETGERRRR YRGVRQRPWG  120
KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RLLPPLQASS  180
QSAQLHAVSS TPPATILPVT TPSPQARMFQ PQPIQSSDIA RDYWEYSQLL RSSGDFQGQQ  240
PAGLLEQMYY ASSLALLHSH SLPSTTTTTF AASPTPSSSA SHPLLLPGQQ RNNTFQTQGS  300
QDQGGSSSFP APSWTDSGHY PPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23111170666ATERF1
3gcc_A4e-23111170666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435520.0KF743552.1 Coffea arabica ERF transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264797.21e-76PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A068USL30.0A0A068USL3_COFCA; Uncharacterized protein
STRINGVIT_18s0072g00260.t012e-75(Vitis vinifera)
STRINGPGSC0003DMT4000163068e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-15ERF family protein