PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g14440 | ||||||||
Common Name | GSCOC_T00006178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bZIP | ||||||||
Protein Properties | Length: 183aa MW: 19715.5 Da PI: 10.2929 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.6 | 3.6e-15 | 100 | 160 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkevaklkse 62 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L k ++e+ k+ ++ lk + Cc10_g14440 100 AQQRQRRMIKNRESAARSRERKQAYQVELEAMAVRLEEENEQLLKeKAERTKERCKLLKEK 160 679***************************************8651567777777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-13 | 94 | 156 | No hit | No description |
SMART | SM00338 | 4.9E-10 | 98 | 162 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-13 | 100 | 160 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 100 | 152 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-9 | 102 | 157 | No hit | No description |
CDD | cd14707 | 3.80E-14 | 102 | 148 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 105 | 120 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MTLEDFLVKA GAVEESAVAA AAGVEGEVKV EAAAVAGTSG GMFAFDSPYM SRQGSVESGG 60 GLGYASAGGL ETMGSGGLGG GGGRGKRRAS SLLEPMDKAA QQRQRRMIKN RESAARSRER 120 KQAYQVELEA MAVRLEEENE QLLKEKAERT KERCKLLKEK VIPVVEKRRP ARILRRVRSM 180 EW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027094727.1 | 1e-126 | G-box-binding factor 4-like isoform X2 | ||||
Refseq | XP_027150041.1 | 1e-126 | G-box-binding factor 4-like | ||||
Swissprot | P42777 | 9e-45 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A068VG93 | 1e-123 | A0A068VG93_COFCA; Uncharacterized protein | ||||
STRING | Solyc04g071510.2.1 | 7e-67 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2771 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-28 | bZIP family protein |