PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g14290
Common NameGSCOC_T00012019001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 290aa    MW: 33277.9 Da    PI: 7.3439
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g14290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.96.9e-101683269
     trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                 W+  e l+L++  + +e + r++ +  ++W+ + +++++ g++rs +qCk+kw+ l+++ kk+k++e 
  Cc10_g14290 16 WSAWECLTLVNEINAVEGEWRQTLASFQKWQLIVENCSALGMNRSMNQCKKKWDALRNEQKKVKQWEA 83
                 9999**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-71582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MERGSRCTRS QAAPDWSAWE CLTLVNEINA VEGEWRQTLA SFQKWQLIVE NCSALGMNRS  60
MNQCKKKWDA LRNEQKKVKQ WEAAYWSFAT AEKKELGLPE EFDKELFNAV EKHMNQRGDD  120
PAALDTELDS DPEAQPIASK MFLQTGPKKQ RKKRMPPRKD KFEERFHPWK HILKGVVKPE  180
PSALDEIPDQ PPKSTAQMVK PEQISKEEKQ KIMTAKLLEN AQLINAVLQG NLAEDVDYKL  240
ADLKNNEAMQ TDSTRRQGDK IIDCLGNIVS TLNQFCHLVQ ECNLRPERN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093169.10.0uncharacterized protein LOC113713610
RefseqXP_027093170.10.0uncharacterized protein LOC113713610
TrEMBLA0A068VBT60.0A0A068VBT6_COFCA; Uncharacterized protein
STRINGXP_009780883.16e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-47sequence-specific DNA binding transcription factors