PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g10960 | ||||||||
Common Name | GSCOC_T00016651001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26742.9 Da PI: 5.0724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 40 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Cc10_g10960 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-11 | 41 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-20 | 41 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 41 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.85E-18 | 42 | 100 | No hit | No description |
PRINTS | PR00367 | 6.1E-9 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVKTEHKIQS EPAKPTKPIP SSSSSSSSSS SSKSKSSCKK KYKGVRMRSW GSWVSEIRAP 60 NQKTRIWLGS YSTAEAAARA YDAALLCLKG SSANLNFPIS SYSLRFPESL VMSPKSIQRV 120 AAAAAATVST TTTATATDPE SPDSPSQPST SSYSASESAS SPTPSLSSSP PDHPPYIIEE 180 EDISASVSLP PANLLDEAVM PMTMNAAAGQ WYTFDSPKYT DMVNGVFFDP MMMIEDVYEE 240 GDINLWSFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-14 | 40 | 99 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ228456 | 4e-54 | FJ228456.1 Glycine max AP2 domain-containing transcription factor 4 (AP2-4) mRNA, complete cds. | |||
GenBank | FJ228457 | 4e-54 | FJ228457.1 Glycine max AP2 domain-containing transcription factor 5 (AP2-5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093335.1 | 1e-180 | ethylene-responsive transcription factor ERF014-like | ||||
Swissprot | Q9SFE4 | 3e-42 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A068V5L6 | 1e-178 | A0A068V5L6_COFCA; Uncharacterized protein | ||||
STRING | GLYMA04G43040.2 | 5e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6177 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-30 | ERF family protein |
Publications ? help Back to Top | |||
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