PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g10570
Common NameGSCOC_T00036008001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 662aa    MW: 72673.2 Da    PI: 9.367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g10570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014232254223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F   +nL+ H+ + H
  Cc10_g10570 232 SCPECGEIFMKAENLELHQAVrH 254
                  8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182231259IPR007087Zinc finger, C2H2
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
SuperFamilySSF563991.53E-22256462No hitNo description
Gene3DG3DSA:3.90.228.102.9E-15257458IPR012317Poly(ADP-ribose) polymerase, catalytic domain
PROSITE profilePS5174236.561508644IPR005175PPC domain
SuperFamilySSF1178564.45E-29508639No hitNo description
Gene3DG3DSA:3.30.1330.802.6E-30511639No hitNo description
CDDcd113782.88E-17512595IPR005175PPC domain
PfamPF034798.2E-24512624IPR005175PPC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MYRDSSGPYR NLYTSFSIMA KSRNTRKQTK ENKKEINQKR SPEQKEKPHS WAVVRSLFTC  60
KHLQAQMQQQ QLQKAEQQQQ KKNSEEKKQQ KEEQGKQEKQ VPDMEESHKK CKKIKCSGSL  120
CSNTKVMHRP EPVSPEDLKK RASSSMGGSF NTENVSCRSI KVTLNDLNGA VVSASSSSSS  180
MFAASTTNSP LITGSFRGMP FRKFSSCYEC RMVVDPVLGM TRDPSLRSTI CSCPECGEIF  240
MKAENLELHQ AVRHAVSELG PEDTSKNIVE IIFQSSWLKK QTPVCKIDRI LKVHNTSKTV  300
SRFEEYRDSI KDKATKHTKK HPRCIADGNE LLRFHCTTFM CSLGLNGSSN LCNSIPNCNV  360
CSIIKNGFKV TGEFSLAGEV TGKAILTTAT SGKAHDNARV VLEDDKRAML VCRVIAGRVK  420
RNLEGSLEEY DSVAGAAGVY SNLDELYVFN PKAILPCFVE ATRIHPTDGE LVTSNTSSGD  480
VVARRPRGRP PSSKNKPKLP VIITQESTNT LRAHILEVSS GCDVFELVAT YVRKRQRGIC  540
ILSSSGTVNN VSLRQPAAAG SIMTLHGWFE ILSLSGSFLP PSAPPGATNL TIYLAGGYGQ  600
VVGGNVVGAL ITFGPVIVIA ASFSNVAYER LSLDEDDHSL QAVAVVVLLL VAQIINFLIH  660
L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149240.10.0uncharacterized protein LOC113749628
TrEMBLA0A068UVV80.0A0A068UVV8_COFCA; Uncharacterized protein
STRINGVIT_18s0001g03670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-99C2H2-like zinc finger protein