PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g10280

Common Name

GSCOC_T00031433001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 328aa MW: 37308.7 Da PI: 8.2647

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g10280	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.7	5.2e-08	192	247	7	63
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e +++k +A rsR RK+++i +Le+ v+ L+ae ++ ele l + l++e+ Cc10_g10280 192 EAKRAK-QQSAHRSRVRKLQYISQLERTVQLLQAEGSEISAELEFLDHQNLILTMEN 247 555555.579**********************************9999988888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-5	190	249	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.36E-13	193	240	No hit	No description
SuperFamily	SSF57959	8.44E-7	198	244	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-8	199	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MESSNCLPNS KTSTYTGRRT IAGSSVVFPQ ILPSCSESSL VGLKASAEST EVSGHQPPRW 60 ASDFFIEEQP FWLDDLLNEP DGLMQRGHRR STSDTFAYLG EAVEDLDLRE EPSHRNLTSK 120 ALSIRQNIGR NKDSKLFESK PSSLVEKFKQ DPHIAVSRSA EKQEEEISTQ TSEGSNEGIS 180 SLSPKPSVSK TEAKRAKQQS AHRSRVRKLQ YISQLERTVQ LLQAEGSEIS AELEFLDHQN 240 LILTMENKAL KQRLDSLSQE QLIKQMEQEM LERELGRLQN LYHMQRQQQM QMQQQQQQHH 300 PKHRRNKSKD LESQLPSVSR KNVRGTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089823.1	0.0	basic leucine zipper 34-like isoform X3
TrEMBL	A0A068UQT9	0.0	A0A068UQT9_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400024003	7e-83	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11445	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	2e-56	bZIP family protein