PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g10020
Common NameGSCOC_T00031467001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 275aa    MW: 29344.8 Da    PI: 6.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g10020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13210255655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Cc10_g10020 210 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 255
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17207268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-11208259No hitNo description
Gene3DG3DSA:4.10.280.101.7E-17209268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10210255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQPAGGGGVG LSRGLGGGGG GGGLARFRSA PATWLEALLE NDDDNDVVLD PPVLASSSNK  60
PPLHPPASSP VQSTQQQQSS AASSRYAADL GMLDTVGSGG GGLSGLLRQN SSPAELLSDG  120
YFSNFGIPAN YDNFLMSSLD VSSESPSKRP READSNNPSP KASSQVKGEQ SEQLHAGMGR  180
LLDSEMEKLS EDAVLCRVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT  240
ADMLEEAVEY VKFLQKQIQE LKEQQKKCKC FAKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150216.11e-154transcription factor bHLH81
RefseqXP_027157260.11e-154transcription factor bHLH81-like
SwissprotQ9C8P89e-73BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A068USX10.0A0A068USX1_COFCA; Uncharacterized protein
STRINGSolyc06g065040.2.13e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-49bHLH family protein